GABRA3

General Information

Gene Name       : GABRA3
Gene ID             : ENSG00000011677.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GABRA3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GABRA3ENSG00000011677.120.000.000.00ENCSR000AEF
HepG2GABRA3ENSG00000011677.120.000.020.01ENCSR985KAT
K562GABRA3ENSG00000011677.122.032.732.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GABRA3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GABRA3 RNA is bound by 1 proteins.  







eCLIP assay for GABRA3 is not avaliable on ENCORE database.





1 proteins are bound to GABRA3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX151561916151561965-intron-Distal4.414363.69589K562DGCR8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GABRA3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GABRA3 is not available on ENCORE database.

  • 20 RBPs can affect the levels of GABRA3.  








The Knockdown/knockout RNA-Seq assay for GABRA3 is not available on ENCORE database.





20 RBPs can affect the gene expression of GABRA3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GABRA3ENSG00000011677.8196.36010118.397500.729802.951502.34850K562AQR
GABRA3ENSG00000011677.829.5939060.88650-1.040802.513301.52180K562DDX3X
GABRA3ENSG00000011677.8259.38740174.978700.567803.192902.50040K562DDX47
GABRA3ENSG00000011677.8163.7221070.402201.217506.242904.82490K562EFTUD2
GABRA3ENSG00000011677.8196.57930125.612900.646003.122802.36590K562EIF2S2
GABRA3ENSG00000011677.8139.4263075.386200.887002.588001.58970K562EIF3D
GABRA3ENSG00000011677.8101.6687064.460600.657302.049801.35690K562EIF3G
GABRA3ENSG00000011677.8106.38150172.97350-0.701302.854401.99170K562FIP1L1
GABRA3ENSG00000011677.8174.2767089.366600.963502.559501.98270K562HNRNPC
GABRA3ENSG00000011677.838.5847092.14360-1.255904.691703.45760K562MATR3
GABRA3ENSG00000011677.8174.89310113.192100.627602.640101.84920K562MTPAP
GABRA3ENSG00000011677.8135.0583082.154900.717102.490101.56450K562PCBP2
GABRA3ENSG00000011677.8118.59130196.36110-0.727503.403602.47760K562PPIG
GABRA3ENSG00000011677.8146.9394068.509301.100804.394003.44970K562PRPF8
GABRA3ENSG00000011677.8189.8836069.789301.443907.788306.40500K562RPS19
GABRA3ENSG00000011677.899.9211059.353900.751302.485301.67600K562SF3B4
GABRA3ENSG00000011677.837.3330083.82910-1.167002.648901.38500K562SFPQ
GABRA3ENSG00000011677.8161.2312078.970901.029603.042201.73110K562SNRNP200
GABRA3ENSG00000011677.847.9099087.91810-0.875802.382801.71870K562SRSF1
GABRA3ENSG00000011677.846.5745083.01270-0.833802.253901.32480K562SRSF5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GABRA3 is not available on ENCORE database.





1 RBPs can affect the splicing of GABRA3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGABRA3ENSG00000011677.8chrX-1513398331513398951513347051513370351513582011513584150.470000.000190.05572includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GABRA3 is not avaliable on ENCORE database.