CTD-3088G3.8

General Information

Gene Name : CTD-3088G3.8
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTD-3088G3.8)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTD-3088G3.8 is not avaliable on ENCORE database.

Proteins bound to RNA

CTD-3088G3.8 RNA is bound by 8 proteins.

eCLIP assay for CTD-3088G3.8 is not avaliable on ENCORE database.

8 proteins are bound to CTD-3088G3.8 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	11557335	11557362	-	intron-Distal	6.78382	82.21242	K562	AGGF1
chr16	11557398	11557427	-	intron-Distal	7.33873	76.35128	K562	AGGF1
chr16	11557267	11557347	-	intron-Distal	3.71753	3.22721	K562	YBX3
chr16	11557554	11557603	-	intron-Distal	6.09882	65.80736	K562	AGGF1
chr16	11557637	11557707	-	intron-Distal	3.57920	5.08340	K562	AKAP8L
chr16	11557971	11557990	-	intron-Distal	6.07790	46.35323	K562	AGGF1
chr16	11557321	11557379	-	intron-Distal	6.91054	36.83579	K562	HNRNPL
chr16	11579143	11579249	-	intron-Distal	3.95635	3.82544	K562	HNRNPL
chr16	11579150	11579248	-	intron-Distal	3.03565	3.69775	K562	YBX3
chr16	11557921	11558084	-	intron-Distal	5.33665	38.40802	K562	HNRNPL
chr16	11557013	11557029	-	intron-Distal	3.64929	5.67528	K562	HNRNPL
chr16	11557740	11557777	-	intron-Distal	6.21071	48.30814	K562	AGGF1
chr16	11557990	11558027	-	intron-Distal	6.49148	62.11429	K562	AGGF1
chr16	11557377	11557398	-	intron-Distal	7.84013	59.30757	K562	AGGF1
chr16	11558027	11558050	-	intron-Distal	7.74245	53.16887	K562	AGGF1
chr16	11559309	11559404	-	intron-Distal	3.85589	3.39667	K562	HNRNPL
chr16	11559310	11559401	-	intron-Distal	5.82024	11.89390	K562	AGGF1
chr16	11570313	11570370	-	intron-Distal	5.52569	6.84138	K562	EIF4G2
chr16	11557482	11557554	-	intron-Distal	7.99056	130.25607	K562	AGGF1
chr16	11557379	11557473	-	intron-Distal	5.83080	33.39567	K562	HNRNPL
chr16	11557470	11557482	-	intron-Distal	7.34113	40.33299	K562	AGGF1
chr16	11557603	11557619	-	intron-Distal	5.14319	22.59548	K562	AGGF1
chr16	11579909	11579960	-	intron-Distal	6.21035	16.15831	K562	AGGF1
chr16	11557244	11557321	-	intron-Distal	5.26419	35.16051	K562	HNRNPL
chr16	11580954	11581023	-	intron-Distal,intron-Proximal	5.66002	12.17576	K562	AGGF1
chr16	11557824	11557854	-	intron-Distal	6.46717	41.46871	K562	AGGF1
chr16	11559604	11559751	-	intron-Distal	5.84653	10.83230	K562	PTBP1
chr16	11580541	11580593	-	intron-Distal	5.23866	8.34017	K562	AGGF1
chr16	11570238	11570391	-	intron-Distal	5.89090	15.92460	K562	TARDBP
chr16	11557300	11557320	-	intron-Distal	7.19564	70.01129	K562	AGGF1
chr16	11557620	11557729	-	intron-Distal	6.71436	32.52461	K562	HNRNPL
chr16	11557012	11557054	-	intron-Distal	6.85338	29.42977	K562	AGGF1
chr16	11579711	11579791	-	intron-Distal	6.11470	16.68946	K562	AGGF1
chr16	11580213	11580291	-	intron-Distal	4.36442	17.15901	K562	AGGF1
chr16	11557826	11557859	-	intron-Distal	4.69303	13.52799	K562	HNRNPL
chr16	11557362	11557377	-	intron-Distal	7.64495	51.76792	K562	AGGF1
chr16	11579964	11580013	-	intron-Distal	5.93265	13.30406	K562	AGGF1
chr16	11570234	11570303	-	intron-Distal	5.62389	17.19015	K562	EIF4G2
chr16	11557777	11557824	-	intron-Distal	7.03352	99.79006	K562	AGGF1
chr16	11557427	11557470	-	intron-Distal	6.98307	87.72602	K562	AGGF1
chr16	11557893	11557911	-	intron-Distal	7.22483	35.77851	K562	AGGF1
chr16	11570409	11570489	-	intron-Distal	4.05332	6.68220	K562	TARDBP
chr16	11557765	11557826	-	intron-Distal	5.39130	38.64666	K562	HNRNPL
chr16	11557903	11557973	-	intron-Distal	4.03812	6.63110	K562	AKAP8L
chr16	11557626	11557717	-	intron-Distal	6.65886	400.00000	K562	AGGF1
chr16	11557911	11557945	-	intron-Distal	6.31999	54.34016	K562	AGGF1
chr16	11557081	11557103	-	intron-Distal	3.60372	5.46159	K562	HNRNPL
chr16	11557480	11557591	-	intron-Distal	5.37401	36.03132	K562	HNRNPL
chr16	11557265	11557300	-	intron-Distal	6.99714	65.16329	K562	AGGF1
chr16	11557854	11557893	-	intron-Distal	6.78657	51.11818	K562	AGGF1
chr16	11580857	11580923	-	intron-Distal	4.20322	9.37563	K562	AGGF1
chr16	11558050	11558097	-	intron-Distal	7.81743	55.19374	K562	AGGF1
chr16	11557320	11557335	-	intron-Distal	6.63141	70.14028	K562	AGGF1
chr16	11557859	11557921	-	intron-Distal	6.18183	22.87243	K562	HNRNPL
chr16	11557204	11557328	-	intron-Distal	3.91144	8.99095	K562	GTF2F1
chr16	11557945	11557971	-	intron-Distal	6.34850	58.98958	K562	AGGF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTD-3088G3.8 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for CTD-3088G3.8 is not available on ENCORE database.
15 RBPs can affect the levels of CTD-3088G3.8.

The Knockdown/knockout RNA-Seq assay for CTD-3088G3.8 is not available on ENCORE database.

15 RBPs can affect the gene expression of CTD-3088G3.8 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTD-3088G3.8	ENSG00000188897.4	28.25440	3.43690	3.03920	4.50670	3.64730	HepG2	CPSF6
CTD-3088G3.8	ENSG00000188897.4	24.70500	3.75320	2.71850	3.78140	2.93810	HepG2	DAZAP1
CTD-3088G3.8	ENSG00000188897.4	1.26770	13.12090	-3.37150	2.26450	1.69350	HepG2	DDX3X
CTD-3088G3.8	ENSG00000188897.4	23.54240	3.54390	2.73180	3.40860	2.51010	HepG2	EIF4G2
CTD-3088G3.8	ENSG00000188897.4	23.75600	3.89730	2.60770	3.07410	2.40360	HepG2	GPKOW
CTD-3088G3.8	ENSG00000188897.4	18.48060	3.15340	2.55090	2.80170	2.19030	HepG2	HNRNPU
CTD-3088G3.8	ENSG00000188897.4	39.24530	12.80550	1.61570	2.75200	1.50930	HepG2	KRR1
CTD-3088G3.8	ENSG00000188897.4	92.01080	3.55110	4.69540	21.47750	20.02830	HepG2	PUF60
CTD-3088G3.8	ENSG00000188897.4	17.27070	3.50440	2.30100	2.18450	1.62120	HepG2	SRSF5
CTD-3088G3.8	ENSG00000188897.4	17.83150	61.65660	-1.78980	3.65680	3.00070	K562	AQR
CTD-3088G3.8	ENSG00000188897.4	20.03570	57.57960	-1.52300	3.44650	2.23630	K562	CNOT7
CTD-3088G3.8	ENSG00000188897.4	11.76860	39.67510	-1.75330	3.39600	2.73520	K562	FXR1
CTD-3088G3.8	ENSG00000188897.4	12.92010	55.31670	-2.09810	4.63080	2.99890	K562	PABPC1
CTD-3088G3.8	ENSG00000188897.4	21.34160	75.82170	-1.82890	5.80460	4.62720	K562	PUF60
CTD-3088G3.8	ENSG00000188897.4	46.21290	80.69620	-0.80420	2.31050	1.34340	K562	PUM1
CTD-3088G3.8	ENSG00000188897.4	25.93940	73.09440	-1.49460	4.50010	2.84290	K562	WRN
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTD-3088G3.8

General Information

Functions

Localization

Domains (AlphaFold: CTD-3088G3.8)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTD-3088G3.8 is not avaliable on ENCORE database.

8 proteins are bound to CTD-3088G3.8 RNA:

eCLIP assay for CTD-3088G3.8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTD-3088G3.8 is not available on ENCORE database.

15 RBPs can affect the gene expression of CTD-3088G3.8 :

The Knockdown/knockout RNA-Seq assay for CTD-3088G3.8 is not available on ENCORE database.

No RBPs affect the alternative splcing events of CTD-3088G3.8 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CTD-3088G3.8 is not avaliable on ENCORE database.