CTD-2192J16.24

General Information

Gene Name : CTD-2192J16.24
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTD-2192J16.24)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTD-2192J16.24 is not avaliable on ENCORE database.

Proteins bound to RNA

CTD-2192J16.24 RNA is bound by 15 proteins.

eCLIP assay for CTD-2192J16.24 is not avaliable on ENCORE database.

15 proteins are bound to CTD-2192J16.24 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	12780032	12780117	-	CDS,intron-Distal,intron-Proximal	4.75718	8.01982	HepG2	EFTUD2
chr19	12780017	12780071	-	CDS,intron-Distal,intron-Proximal	4.96878	6.38747	HepG2	AQR
chr19	12776603	12776619	-	CDS,intron-Distal	3.17366	3.08258	K562	TIA1
chr19	12779950	12780024	-	CDS,intron-Distal	4.35275	6.32078	HepG2	RPS3
chr19	12779957	12780024	-	CDS,intron-Distal	4.33514	8.02139	HepG2	LARP4
chr19	12779945	12780048	-	CDS,intron-Distal,intron-Proximal	4.43496	8.35382	K562	RPS3
chr19	12776167	12776261	-	CDS,intron-Distal	3.43528	7.24294	K562	YBX3
chr19	12780166	12780241	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.04267	4.62632	K562	DDX3X
chr19	12777415	12777525	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.46479	11.13092	HepG2	DDX3X
chr19	12778904	12778952	-	3'-UTR,intron-Distal,intron-Proximal	3.82128	10.78852	HepG2	LARP4
chr19	12778903	12779142	-	3'-UTR,intron-Distal,intron-Proximal	4.23538	11.76398	HepG2	AKAP1
chr19	12778946	12779022	-	3'-UTR,intron-Distal,intron-Proximal	3.47150	7.33476	K562	PABPC4
chr19	12779169	12779228	-	3'-UTR,CDS,intron-Distal	3.77113	11.06965	HepG2	LARP4
chr19	12778952	12779023	-	3'-UTR,intron-Distal,intron-Proximal	4.71030	19.10220	HepG2	LARP4
chr19	12779025	12779043	-	3'-UTR,intron-Distal	5.04426	9.44079	K562	IGF2BP2
chr19	12778751	12778889	-	3'-UTR,intron-Distal,intron-Proximal,polyA_site	4.31931	3.80314	K562	CSTF2T
chr19	12779400	12779454	-	CDS,intron-Distal,intron-Proximal	4.95511	5.69951	K562	AQR
chr19	12778977	12779141	-	3'-UTR,intron-Distal	3.61211	3.52724	HepG2	PABPN1
chr19	12779023	12779104	-	3'-UTR,intron-Distal	4.58893	20.63136	HepG2	LARP4
chr19	12778944	12778980	-	3'-UTR,intron-Distal,intron-Proximal	4.74031	6.21733	K562	PUM2
chr19	12778939	12779020	-	3'-UTR,intron-Distal,intron-Proximal	3.39779	3.97153	HepG2	UPF1
chr19	12778904	12778946	-	3'-UTR,intron-Distal,intron-Proximal	4.01196	4.23276	K562	PABPC4
chr19	12778904	12779071	-	3'-UTR,intron-Distal,intron-Proximal	3.66254	5.65632	K562	UPF1
chr19	12779012	12779025	-	3'-UTR,intron-Distal	3.38267	6.04547	K562	IGF2BP2
chr19	12779104	12779150	-	3'-UTR,intron-Distal	5.34247	16.50828	HepG2	LARP4
chr19	12779150	12779235	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.26058	9.39295	K562	YBX3
chr19	12779043	12779144	-	3'-UTR,intron-Distal	4.08026	9.11908	HepG2	DDX55
chr19	12779020	12779144	-	3'-UTR,intron-Distal	5.02931	7.98718	HepG2	UPF1
chr19	12778893	12778944	-	3'-UTR,intron-Distal,intron-Proximal	6.29805	22.29472	K562	PUM2
chr19	12779860	12779937	-	intron-Distal,intron-Proximal	5.59684	7.28294	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTD-2192J16.24 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for CTD-2192J16.24 is not available on ENCORE database.
8 RBPs can affect the levels of CTD-2192J16.24.

The Knockdown/knockout RNA-Seq assay for CTD-2192J16.24 is not available on ENCORE database.

8 RBPs can affect the gene expression of CTD-2192J16.24 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTD-2192J16.24	ENSG00000269590.1	0.50640	16.83600	-5.05520	4.44230	2.26770	HepG2	APOBEC3C
CTD-2192J16.24	ENSG00000269590.1	1.61470	18.02880	-3.48100	3.30400	2.46200	HepG2	CNOT7
CTD-2192J16.24	ENSG00000269590.1	0.00000	15.24180	-99999.99999	4.77960	2.93810	HepG2	HNRNPA0
CTD-2192J16.24	ENSG00000269590.1	0.00000	17.57550	-99999.99999	5.64030	3.70780	HepG2	ILF3
CTD-2192J16.24	ENSG00000269590.1	0.00000	17.17550	-99999.99999	5.74990	3.93720	HepG2	KHDRBS1
CTD-2192J16.24	ENSG00000269590.1	0.00000	16.47720	-99999.99999	5.13660	3.89710	HepG2	PABPC1
CTD-2192J16.24	ENSG00000269590.1	0.00000	15.74420	-99999.99999	5.43850	3.85050	HepG2	STIP1
CTD-2192J16.24	ENSG00000269590.1	2.56860	16.21230	-2.65800	2.84510	1.72920	HepG2	XPO5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTD-2192J16.24

General Information

Functions

Localization

Domains (AlphaFold: CTD-2192J16.24)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTD-2192J16.24 is not avaliable on ENCORE database.

15 proteins are bound to CTD-2192J16.24 RNA:

eCLIP assay for CTD-2192J16.24 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTD-2192J16.24 is not available on ENCORE database.

8 RBPs can affect the gene expression of CTD-2192J16.24 :

The Knockdown/knockout RNA-Seq assay for CTD-2192J16.24 is not available on ENCORE database.

No RBPs affect the alternative splcing events of CTD-2192J16.24 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CTD-2192J16.24 is not avaliable on ENCORE database.