AC007040.11

General Information

Gene Name : AC007040.11
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AC007040.11)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AC007040.11 is not avaliable on ENCORE database.

Proteins bound to RNA

AC007040.11 RNA is bound by 19 proteins.

eCLIP assay for AC007040.11 is not avaliable on ENCORE database.

19 proteins are bound to AC007040.11 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	71221818	71221903	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.27092	6.42503	K562	DDX3X
chr2	71221835	71221988	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.18716	77.54316	HepG2	DDX3X
chr2	71221829	71221957	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.87142	6.46700	K562	GEMIN5
chr2	71216133	71216148	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32813	3.90824	K562	YBX3
chr2	71220890	71220906	-	CDS,intron-Distal,intron-Proximal	3.64046	4.00968	HepG2	DDX3X
chr2	71221823	71221838	-	CDS,intron-Distal,intron-Proximal	3.87124	5.55970	K562	YBX3
chr2	71221817	71221835	-	CDS,intron-Distal,intron-Proximal	3.84798	5.84843	HepG2	DDX3X
chr2	71220790	71220942	-	CDS,intron-Distal,intron-Proximal	3.73251	5.23469	HepG2	AQR
chr2	71219036	71219092	-	CDS,intron-Distal	3.60873	5.37252	K562	YBX3
chr2	71216046	71216111	-	3'-UTR,CDS,intron-Distal	3.12771	11.18947	K562	UPF1
chr2	71216057	71216089	-	3'-UTR,CDS,intron-Distal	3.39904	3.20756	HepG2	UPF1
chr2	71216806	71216882	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.28659	6.01372	K562	AQR
chr2	71216878	71216905	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.41385	3.66308	K562	UPF1
chr2	71220878	71220906	-	CDS,intron-Distal,intron-Proximal	3.30660	6.18351	K562	YBX3
chr2	71221817	71221823	-	CDS,intron-Distal	3.73785	4.94406	K562	YBX3
chr2	71215413	71215453	-	3'-UTR,intron-Distal,intron-Proximal	4.80021	5.97584	HepG2	MATR3
chr2	71213602	71213710	-	3'-UTR,intron-Distal	3.52804	4.57631	HepG2	IGF2BP3
chr2	71215643	71215687	-	3'-UTR,intron-Distal,intron-Proximal	4.03508	7.72256	HepG2	AKAP1
chr2	71215329	71215390	-	3'-UTR,intron-Distal,intron-Proximal	5.19610	19.63494	HepG2	UPF1
chr2	71215567	71215625	-	3'-UTR,intron-Distal	6.13371	14.82900	HepG2	AKAP1
chr2	71213324	71213339	-	3'-UTR,intron-Distal	4.30341	3.84732	HepG2	TIA1
chr2	71213574	71213648	-	3'-UTR,intron-Distal	4.39549	19.77531	K562	UPF1
chr2	71215464	71215535	-	3'-UTR,intron-Distal,intron-Proximal	4.06668	17.94332	K562	UPF1
chr2	71215450	71215556	-	3'-UTR,intron-Distal,intron-Proximal	5.73548	23.07727	HepG2	AKAP1
chr2	71214293	71214336	-	3'-UTR,intron-Distal	4.16007	7.72256	HepG2	AKAP1
chr2	71214100	71214161	-	3'-UTR,intron-Distal	4.61246	19.64189	K562	UPF1
chr2	71213188	71213265	-	3'-UTR,intron-Distal	3.35461	5.02982	HepG2	IGF2BP1
chr2	71213667	71213720	-	3'-UTR,intron-Distal	3.01576	7.70954	HepG2	SUGP2
chr2	71215116	71215159	-	3'-UTR,intron-Distal	4.81458	18.64197	K562	UPF1
chr2	71213320	71213336	-	3'-UTR,intron-Distal	3.92557	6.71887	K562	TIA1
chr2	71213097	71213141	-	3'-UTR,intron-Distal	6.44330	19.34122	K562	UPF1
chr2	71214164	71214256	-	3'-UTR,intron-Distal	4.72300	27.36055	HepG2	PCBP2
chr2	71214852	71214937	-	3'-UTR,intron-Distal	5.05015	18.33311	HepG2	SUGP2
chr2	71214862	71214905	-	3'-UTR,intron-Distal	5.33211	18.13060	K562	UPF1
chr2	71213694	71213716	-	3'-UTR,intron-Distal	4.77102	5.45170	HepG2	AKAP1
chr2	71215331	71215377	-	3'-UTR,intron-Distal	4.02182	3.31982	HepG2	IGF2BP1
chr2	71214175	71214262	-	3'-UTR,intron-Distal	4.54358	13.52127	HepG2	AKAP1
chr2	71214977	71215018	-	3'-UTR,intron-Distal	5.10588	7.53166	HepG2	AKAP1
chr2	71214270	71214344	-	3'-UTR,intron-Distal	4.36251	14.63062	HepG2	UPF1
chr2	71213939	71213984	-	3'-UTR,intron-Distal	4.12244	9.00162	HepG2	SUGP2
chr2	71215574	71215603	-	3'-UTR,intron-Distal	3.42651	3.84025	HepG2	SUGP2
chr2	71213227	71213277	-	3'-UTR,intron-Distal	4.34480	8.23922	HepG2	AKAP1
chr2	71215555	71215627	-	3'-UTR,intron-Distal	5.63183	21.45701	HepG2	UPF1
chr2	71214154	71214253	-	3'-UTR,intron-Distal	4.02998	6.95450	K562	PCBP1
chr2	71214344	71214407	-	3'-UTR,intron-Distal	5.56001	13.08346	HepG2	UPF1
chr2	71213552	71213649	-	3'-UTR,intron-Distal	3.49077	15.42421	HepG2	SUGP2
chr2	71213298	71213324	-	3'-UTR,intron-Distal	4.32538	3.84732	HepG2	TIA1
chr2	71213290	71213320	-	3'-UTR,intron-Distal	4.00312	7.43356	K562	TIA1
chr2	71215101	71215179	-	3'-UTR,intron-Distal	3.96139	5.60995	K562	MATR3
chr2	71214000	71214050	-	3'-UTR,intron-Distal	3.80479	9.50395	HepG2	SUGP2
chr2	71215338	71215388	-	3'-UTR,intron-Distal,intron-Proximal	4.51093	18.01039	K562	UPF1
chr2	71215646	71215714	-	3'-UTR,intron-Distal,intron-Proximal	4.42174	4.01795	HepG2	LARP4
chr2	71213586	71213663	-	3'-UTR,intron-Distal	4.54468	12.41019	HepG2	IGF2BP1
chr2	71214959	71215002	-	3'-UTR,intron-Distal	3.10710	7.00841	HepG2	SUGP2
chr2	71213185	71213256	-	3'-UTR,intron-Distal	4.26390	5.01371	HepG2	IGF2BP3
chr2	71213243	71213326	-	3'-UTR,intron-Distal	3.17885	3.71597	K562	MATR3
chr2	71215695	71215758	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.74083	10.82140	HepG2	UPF1
chr2	71215388	71215457	-	3'-UTR,intron-Distal,intron-Proximal	5.87855	26.17190	K562	UPF1
chr2	71215049	71215101	-	3'-UTR,intron-Distal	4.52537	6.07826	K562	IGF2BP2
chr2	71215384	71215442	-	3'-UTR,intron-Distal,intron-Proximal	4.30751	4.10604	K562	METAP2
chr2	71215097	71215173	-	3'-UTR,intron-Distal	3.18184	14.80272	HepG2	SUGP2
chr2	71213097	71213134	-	3'-UTR,intron-Distal	3.66352	5.56003	HepG2	AKAP1
chr2	71215394	71215450	-	3'-UTR,intron-Distal,intron-Proximal	5.13505	17.17848	HepG2	AKAP1
chr2	71214027	71214071	-	3'-UTR,intron-Distal	3.29095	7.43270	HepG2	PCBP2
chr2	71214002	71214096	-	3'-UTR,intron-Distal	4.10468	24.73736	K562	UPF1
chr2	71214371	71214417	-	3'-UTR,intron-Distal	4.07366	15.20799	K562	UPF1
chr2	71215334	71215377	-	3'-UTR,intron-Distal	4.38633	9.26660	HepG2	AKAP1
chr2	71214011	71214121	-	3'-UTR,intron-Distal	4.39049	13.41356	HepG2	MATR3
chr2	71215675	71215721	-	3'-UTR,intron-Distal,intron-Proximal	4.38883	4.08466	HepG2	IGF2BP1
chr2	71215117	71215165	-	3'-UTR,intron-Distal	3.46455	4.32634	HepG2	PTBP1
chr2	71216823	71216877	-	intron-Distal,intron-Proximal	4.17691	3.02181	K562	PRPF8
chr2	71213153	71213261	-	3'-UTR,intron-Distal	4.01474	7.23433	K562	IGF2BP1
chr2	71215457	71215555	-	3'-UTR,intron-Distal,intron-Proximal	6.42268	39.71706	HepG2	UPF1
chr2	71214200	71214319	-	3'-UTR,intron-Distal	3.84981	6.44854	HepG2	IGF2BP3
chr2	71214533	71214610	-	3'-UTR,intron-Distal	5.80266	26.53098	K562	UPF1
chr2	71213493	71213527	-	3'-UTR,intron-Distal	5.06719	6.75461	HepG2	AKAP1
chr2	71213181	71213203	-	3'-UTR,intron-Distal	4.65052	5.45170	HepG2	AKAP1
chr2	71214183	71214257	-	3'-UTR,intron-Distal	3.90543	19.37049	K562	UPF1
chr2	71215061	71215214	-	3'-UTR,intron-Distal	3.69721	13.79874	HepG2	MATR3
chr2	71214050	71214126	-	3'-UTR,intron-Distal	3.82428	12.90475	HepG2	SUGP2
chr2	71214669	71214692	-	3'-UTR,intron-Distal	4.74316	11.77875	K562	UPF1
chr2	71215115	71215155	-	3'-UTR,intron-Distal	4.01626	8.66689	HepG2	AKAP1
chr2	71215056	71215122	-	3'-UTR,intron-Distal	5.00620	16.56794	HepG2	UPF1
chr2	71213948	71213993	-	3'-UTR,intron-Distal	4.25044	8.36737	HepG2	MATR3
chr2	71215627	71215695	-	3'-UTR,intron-Distal,intron-Proximal	4.69252	25.17676	HepG2	UPF1
chr2	71213182	71213269	-	3'-UTR,intron-Distal	4.07182	11.18511	K562	IGF2BP2
chr2	71215160	71215215	-	3'-UTR,intron-Distal	4.56350	7.98114	HepG2	AKAP1
chr2	71213095	71213136	-	3'-UTR,intron-Distal	5.02332	7.90397	K562	PABPC4
chr2	71214175	71214270	-	3'-UTR,intron-Distal	5.03166	14.32215	HepG2	UPF1
chr2	71214006	71214126	-	3'-UTR,intron-Distal	6.06026	19.02389	HepG2	UPF1
chr2	71213978	71214050	-	3'-UTR,intron-Distal	3.33358	7.44060	HepG2	AKAP1
chr2	71215390	71215457	-	3'-UTR,intron-Distal,intron-Proximal	6.02999	30.43489	HepG2	UPF1
chr2	71213495	71213550	-	3'-UTR,intron-Distal	4.26300	8.73365	HepG2	UPF1
chr2	71213767	71213773	-	3'-UTR,intron-Distal	4.52127	5.58061	HepG2	SUGP2
chr2	71213098	71213178	-	3'-UTR,intron-Distal	4.97725	7.26512	HepG2	LARP4
chr2	71213673	71213723	-	3'-UTR,intron-Distal	3.42096	4.53157	HepG2	MATR3
chr2	71213485	71213532	-	3'-UTR,intron-Distal	3.49805	10.51791	K562	UPF1
chr2	71213286	71213346	-	3'-UTR,intron-Distal	3.61474	4.81657	K562	IGF2BP1
chr2	71213673	71213714	-	3'-UTR,intron-Distal	3.63119	13.92183	K562	UPF1
chr2	71215781	71215829	-	3'-UTR,CDS,intron-Distal	5.27685	11.87626	K562	YBX3
chr2	71214053	71214106	-	3'-UTR,intron-Distal	4.69810	10.03265	HepG2	AKAP1
chr2	71214968	71215004	-	3'-UTR,intron-Distal	5.96121	14.85952	K562	UPF1
chr2	71215701	71215752	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.21119	3.25727	K562	METAP2
chr2	71215059	71215108	-	3'-UTR,intron-Distal	6.38405	20.15849	K562	UPF1
chr2	71215069	71215111	-	3'-UTR,intron-Distal	3.33403	6.27467	HepG2	AKAP1
chr2	71213663	71213716	-	3'-UTR,intron-Distal	4.00404	7.33618	HepG2	IGF2BP1
chr2	71213606	71213682	-	3'-UTR,intron-Distal	3.45101	9.17159	K562	IGF2BP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for AC007040.11 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for AC007040.11 is not available on ENCORE database.
4 RBPs can affect the levels of AC007040.11.

The Knockdown/knockout RNA-Seq assay for AC007040.11 is not available on ENCORE database.

4 RBPs can affect the gene expression of AC007040.11 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AC007040.11	ENSG00000258881.2	16.00060	2.37400	2.75270	1.96290	1.50560	HepG2	AKAP1
AC007040.11	ENSG00000258881.2	12.36500	1.99500	2.63170	1.87850	1.30860	HepG2	HNRNPL
AC007040.11	ENSG00000258881.2	12.11270	1.69230	2.83940	2.21490	1.66080	HepG2	PCBP1
AC007040.11	ENSG00000258881.2	15.08090	1.52350	3.30710	3.33050	2.73640	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AC007040.11

General Information

Functions

Localization

Domains (AlphaFold: AC007040.11)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AC007040.11 is not avaliable on ENCORE database.

19 proteins are bound to AC007040.11 RNA:

eCLIP assay for AC007040.11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AC007040.11 is not available on ENCORE database.

4 RBPs can affect the gene expression of AC007040.11 :

The Knockdown/knockout RNA-Seq assay for AC007040.11 is not available on ENCORE database.

No RBPs affect the alternative splcing events of AC007040.11 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for AC007040.11 is not avaliable on ENCORE database.