UBE2I

General Information

Gene Name : UBE2I
Gene ID : ENSG00000103275.19
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: UBE2I)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	UBE2I	ENSG00000103275.19	167.15	165.17	166.16	ENCSR000AEF
HepG2	UBE2I	ENSG00000103275.19	117.69	148.65	133.17	ENCSR985KAT
K562	UBE2I	ENSG00000103275.19	160.45	170.53	165.49	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	UBE2I-BG293LV03-WT293		UBE2I	293T	Released			shRNA	KD% = ,
knockdown followed by RNA-seq	UBE2I-BG293LV06-WT293		UBE2I	293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
UBE2I	Ribo-STAMP-293T	shRNA	BGRSLV05-33,BGRSLV05-34	BGRSLV05-1,BGRSLV05-2		NotSatisfied	ENCORE2
UBE2I	293T	shRNA	UBE2I-BG293LV03-27,UBE2I-BG293LV03-28	NT-BG293LV03-1,NT-BG293LV03-2	,	Released	ENCORE2
UBE2I	293T	shRNA	BG293LV03-29,BG293LV03-30	BG293LV03-1,BG293LV03-2		NotSatisfied	ENCORE2
UBE2I	293T	shRNA	UBE2I-BG293LV06-33,UBE2I-BG293LV06-34	NT-BG293LV06-1,NT-BG293LV06-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for UBE2I is not avaliable on ENCORE database.

Proteins bound to RNA

UBE2I RNA is bound by 51 proteins.

CanvasJS.com

eCLIP assay for UBE2I is not avaliable on ENCORE database.

51 proteins are bound to UBE2I RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	1360906	1360963	+	intron-Distal	7.07844	50.93506	K562	HNRNPM
chr16	1360779	1360815	+	intron-Distal	5.55617	33.69118	K562	HNRNPM
chr16	1360752	1360779	+	intron-Distal	5.13185	30.34212	K562	HNRNPM
chr16	1360858	1360906	+	intron-Distal	5.79310	28.77405	K562	HNRNPM
chr16	1360482	1360554	+	intron-Distal	5.89243	25.69084	K562	EXOSC5
chr16	1360856	1360908	+	intron-Distal	5.87582	25.27817	HepG2	HNRNPM
chr16	1360406	1360469	+	intron-Distal	4.61496	24.38492	K562	EXOSC5
chr16	1370507	1370565	+	CDS,intron-Proximal	4.40156	24.04365	HepG2	PRPF8
chr16	1364019	1364096	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.80260	23.29695	K562	DDX3X
chr16	1361349	1361431	+	intron-Distal	5.34587	23.26074	K562	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 251 entries

eCLIP assay for UBE2I is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for UBE2I is not available on ENCORE database.
87 RBPs can affect the levels of UBE2I.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for UBE2I is not available on ENCORE database.

87 RBPs can affect the gene expression of UBE2I :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
UBE2I	ENSG00000103275.14	2371.28040	4714.80710	-0.99150	34.80110	32.58930	K562	UPF1
UBE2I	ENSG00000103275.14	999.30710	1840.11820	-0.88080	19.46980	18.36220	HepG2	TIAL1
UBE2I	ENSG00000103275.14	477.55160	1062.59060	-1.15390	19.62720	17.27000	HepG2	CSTF2
UBE2I	ENSG00000103275.14	2307.92210	3889.07660	-0.75280	13.45970	12.27800	HepG2	BOP1
UBE2I	ENSG00000103275.14	1928.70920	4254.08110	-1.14120	13.52520	11.81930	HepG2	SNRNP70
UBE2I	ENSG00000103275.14	990.12250	1656.08200	-0.74210	14.38410	11.75970	K562	CSTF2
UBE2I	ENSG00000103275.14	5342.45680	3891.02650	0.45730	12.19140	11.09390	K562	AGGF1
UBE2I	ENSG00000103275.14	2903.25430	4001.79830	-0.46300	12.16410	10.60620	K562	MTPAP
UBE2I	ENSG00000103275.14	1415.32860	1973.39580	-0.47950	10.17780	9.12260	HepG2	PUS1
UBE2I	ENSG00000103275.14	1352.67770	2229.11260	-0.72070	9.07160	7.88400	HepG2	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 101 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for UBE2I is not available on ENCORE database.

11 RBPs can affect the splicing of UBE2I :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	UBE2I	ENSG00000103275.14	chr16	+	1362347	1362604	1359635	1359774	1364020	1364097	0.08900	0.00000	0.00000	included	K562	XRCC6
SE	UBE2I	ENSG00000103275.14	chr16	+	1362347	1362604	1359635	1359774	1364020	1364097	0.08100	0.00000	0.00000	included	K562	PUM1
SE	UBE2I	ENSG00000103275.14	chr16	+	1364020	1364097	1359636	1359774	1365654	1365731	-0.15400	0.00000	0.00110	excluded	HepG2	DDX59
SE	UBE2I	ENSG00000103275.14	chr16	+	1362347	1362604	1359635	1359774	1364020	1364097	0.18500	0.00000	0.00007	included	HepG2	U2AF2
SE	UBE2I	ENSG00000103275.14	chr16	+	1362347	1362604	1359635	1359774	1364020	1364097	0.05500	0.00000	0.00000	included	K562	AQR
SE	UBE2I	ENSG00000103275.14	chr16	+	1362397	1362604	1359636	1359774	1364020	1364097	-0.07000	0.00002	0.05378	excluded	K562	LIN28B
A5SS	UBE2I	ENSG00000103275.14	chr16	+	1362347	1362668	1362347	1362604	1364020	1364097	0.26500	0.00004	0.00102	longer	K562	AQR
SE	UBE2I	ENSG00000103275.14	chr16	+	1362347	1362604	1359635	1359774	1364020	1364097	-0.06900	0.00008	0.03004	excluded	HepG2	NOL12
SE	UBE2I	ENSG00000103275.14	chr16	+	1362347	1362604	1359635	1359774	1364020	1364097	0.11100	0.00011	0.00716	included	K562	SF3B1
A5SS	UBE2I	ENSG00000103275.14	chr16	+	1362347	1362668	1362347	1362604	1364020	1364097	-0.10200	0.00011	0.06684	shorter	K562	PUM1

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

UBE2I

General Information

Functions

Localization

Domains (AlphaFold: UBE2I)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for UBE2I is not avaliable on ENCORE database.

51 proteins are bound to UBE2I RNA:

eCLIP assay for UBE2I is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for UBE2I is not available on ENCORE database.

87 RBPs can affect the gene expression of UBE2I :

The Knockdown/knockout RNA-Seq assay for UBE2I is not available on ENCORE database.

11 RBPs can affect the splicing of UBE2I :

The Knockdown/knockout RNA-Seq assay for UBE2I is not avaliable on ENCORE database.