RPS12

General Information

Gene Name : RPS12
Gene ID : ENSG00000112306.7
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPS12)

Not Available

Antibody Validation

Bethyl Labs: A305-037A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPS12	ENSG00000112306.7	763.21	1058.15	910.68	ENCSR000AEF
HepG2	RPS12	ENSG00000112306.7	2730.83	1984.18	2357.51	ENCSR985KAT
K562	RPS12	ENSG00000112306.7	1280.14	970.77	1125.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
RPS12	ENCAB450FMJ	A305-037A	1			Released, ENCODE4		BGKcLV46-69, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
RPS12	K562	CRISPR	BGKcLV30-61,BGKcLV30-62	BGKcLV30-1,BGKcLV30-2	0.0,0.0	NotSatisfied	ENCODE4
RPS12	K562	CRISPR	BGKcLV35-49,BGKcLV35-50	BGKcLV35-1,BGKcLV35-2	0.0,0.0	NotSatisfied	ENCORE2
RPS12	K562	CRISPR	RPS12-BGKcLV46-69,RPS12-BGKcLV46-70	NT-BGKcLV46-1,NT-BGKcLV46-2	67.4,67.2501	Submitting	ENCORE2
RPS12	K562	CRISPR	BGKcLV46-71,BGKcLV46-72	BGKcLV46-1,BGKcLV46-2	0.0,0.0	NotSatisfied	ENCORE2
RPS12	HepG2	CRISPR	BGHcLV32-59,BGHcLV32-60	BGHcLV32-1,BGHcLV32-2	0.0,0.0	NotSatisfied	ENCODE4
RPS12	HepG2	CRISPR	BGHcLV34-37,BGHcLV34-38	BGHcLV34-1,BGHcLV34-2	0.0,0.0	NotSatisfied	ENCORE2
RPS12	HepG2	CRISPR	BGHcLV47-57,BGHcLV47-58	BGHcLV47-1,BGHcLV47-2	89.4,93.8	Sequencing	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
RPS12	Product_ID: A305-037A Lot_ID: 1 Source: Bethyl Labs Target Name: RPS12-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPS12 is not avaliable on ENCORE database.

Proteins bound to RNA

RPS12 RNA is bound by 40 proteins.

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eCLIP assay for RPS12 is not avaliable on ENCORE database.

40 proteins are bound to RPS12 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	133135711	133135752	+	5'-UTR	3.93264	400.00000	K562	DDX3X
chr6	133135725	133135748	+	5'-UTR	3.28506	400.00000	K562	YBX3
chr6	133135870	133135878	+	5'-UTR,intron-Proximal	5.00283	400.00000	K562	PABPC4
chr6	133135726	133135747	+	5'-UTR	4.98599	400.00000	K562	PABPC4
chr6	133135870	133135878	+	5'-UTR,intron-Proximal	4.15363	400.00000	K562	DDX3X
chr6	133135892	133135905	+	5'-UTR	3.47111	400.00000	K562	PABPC4
chr6	133135882	133135907	+	5'-UTR	4.19111	400.00000	K562	YBX3
chr6	133135885	133135892	+	5'-UTR	3.62830	400.00000	K562	PABPC4
chr6	133135905	133135917	+	5'-UTR,CDS	3.22827	400.00000	K562	PABPC4
chr6	133135712	133135725	+	5'-UTR	3.28961	400.00000	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 191 entries

eCLIP assay for RPS12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPS12 is not available on ENCORE database.
152 RBPs can affect the levels of RPS12.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPS12 is not available on ENCORE database.

152 RBPs can affect the gene expression of RPS12 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPS12	ENSG00000112306.7	10129.97540	28639.45450	-1.49940	175.56450	173.34520	HepG2	SRSF1
RPS12	ENSG00000112306.7	8998.60960	26354.36190	-1.55030	146.26590	143.84810	HepG2	PTBP1
RPS12	ENSG00000112306.7	11404.98940	29329.74150	-1.36270	123.48840	121.31770	HepG2	NELFE
RPS12	ENSG00000112306.7	7003.76990	33293.17460	-2.24900	87.54390	84.36880	HepG2	NCBP2
RPS12	ENSG00000112306.7	11812.93840	28542.08350	-1.27270	71.83690	69.50690	HepG2	QKI
RPS12	ENSG00000112306.7	14205.60180	27438.00540	-0.94970	63.59520	61.48040	HepG2	SF3B4
RPS12	ENSG00000112306.7	13113.93070	25642.28050	-0.96740	60.99520	58.86560	HepG2	ETF1
RPS12	ENSG00000112306.7	2314.68680	7154.02200	-1.62790	58.41700	56.68060	HepG2	TIAL1
RPS12	ENSG00000112306.7	8847.34790	32527.34540	-1.87830	58.35230	55.77290	HepG2	MATR3
RPS12	ENSG00000112306.7	14866.08850	27316.90940	-0.87780	55.17180	53.17320	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 179 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPS12 is not available on ENCORE database.

35 RBPs can affect the splicing of RPS12 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RPS12	ENSG00000112306.7	chr6	+	133136156	133136363			133135850	133135921	133137599	133137702	-0.33000	0.00000	excluded	K562	SRSF1
SE	RPS12	ENSG00000112306.7	chr6	+	133136154	133136363			133135850	133135921	133137599	133137702	-0.33000	0.00000	excluded	K562	PRPF8
SE	RPS12	ENSG00000112306.7	chr6	+	133136154	133136363			133135850	133135921	133137599	133137702	-0.29800	0.00000	excluded	K562	TARDBP
A5SS	RPS12	ENSG00000112306.7	chr6	+	133136110	133136363			133136110	133136227	133138098	133138200	-0.06800	0.00072	shorter	K562	RBM22
A5SS	RPS12	ENSG00000112306.7	chr6	+	133136154	133136363			133136154	133136227	133138098	133138128	-0.09900	0.00000	shorter	K562	AQR
A5SS	RPS12	ENSG00000112306.7	chr6	+	133136156	133136363			133136156	133136227	133138618	133138703	-0.10900	0.00020	shorter	K562	SUPV3L1
A5SS	RPS12	ENSG00000112306.7	chr6	+	133136110	133136363			133136110	133136227	133138618	133138703	-0.16700	0.00000	shorter	HepG2	SSB
MXE	RPS12	ENSG00000112306.7	chr6	+	133136110	133136227	133137599	133137702	133135870	133135921	133138098	133138200	0.13800	0.00000	1included	K562	UCHL5
MXE	RPS12	ENSG00000112306.7	chr6	+	133136110	133136363	133138098	133138200	133135870	133135921	133138618	133138703	0.12300	0.00000	1included	K562	UCHL5
MXE	RPS12	ENSG00000112306.7	chr6	+	133136110	133136363	133137599	133137702	133135870	133135921	133138098	133138200	0.13800	0.00000	1included	K562	UCHL5

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPS12

General Information

Functions

Localization

Domains (AlphaFold: RPS12)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPS12 is not avaliable on ENCORE database.

40 proteins are bound to RPS12 RNA:

eCLIP assay for RPS12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPS12 is not available on ENCORE database.

152 RBPs can affect the gene expression of RPS12 :

The Knockdown/knockout RNA-Seq assay for RPS12 is not available on ENCORE database.

35 RBPs can affect the splicing of RPS12 :

The Knockdown/knockout RNA-Seq assay for RPS12 is not avaliable on ENCORE database.