RPS12-BGKcLV46-69_S33_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set77/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3397 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV46-1_S1_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 32182 |
RPS12-BGKcLV46-69_S33_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set77/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3397 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV46-1_S1_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 32232 |
RPS12-BGKcLV46-69_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3397 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-69_S33_L001_R1_001.filtered.trimmed.paired.fastq.gz,RPS12-BGKcLV46-69_S33_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 32282 |
RPS12-BGKcLV46-69_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3397 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-69_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32332 |
RPS12-BGKcLV46-69_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3397 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-69_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32382 |
RPS12-BGKcLV46-69_Signal.Unique.strand-.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3397 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-69_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32432 |
RPS12-BGKcLV46-69_Signal.Unique.strand+.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3397 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-69_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32482 |
RPS12-BGKcLV46-69_quant.sf | ENCODE_DATA/set77/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3397 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-69_S33_L001_R1_001.filtered.trimmed.paired.fastq.gz,RPS12-BGKcLV46-69_S33_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 32532 |
RPS12-BGKcLV46-70_S34_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set77/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3398 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV46-1_S1_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 32183 |
RPS12-BGKcLV46-70_S34_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set77/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3398 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV46-1_S1_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 32233 |
RPS12-BGKcLV46-70_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3398 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-70_S34_L001_R1_001.filtered.trimmed.paired.fastq.gz,RPS12-BGKcLV46-70_S34_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 32283 |
RPS12-BGKcLV46-70_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3398 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-70_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32333 |
RPS12-BGKcLV46-70_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3398 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-70_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32383 |
RPS12-BGKcLV46-70_Signal.Unique.strand-.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3398 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-70_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32433 |
RPS12-BGKcLV46-70_Signal.Unique.strand+.bw | ENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3398 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-70_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 32483 |
RPS12-BGKcLV46-70_quant.sf | ENCODE_DATA/set77/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3398 | | | | | GRCh38 | V40 | RPS12-BGKcLV46-70_S34_L001_R1_001.filtered.trimmed.paired.fastq.gz,RPS12-BGKcLV46-70_S34_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 32533 |