USB1

General Information

Gene Name : USB1
Gene ID : ENSG00000103005.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: USB1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	USB1	ENSG00000103005.11	23.71	27.03	25.37	ENCSR000AEF
HepG2	USB1	ENSG00000103005.11	70.85	38.71	54.78	ENCSR985KAT
K562	USB1	ENSG00000103005.11	67.86	43.33	55.59	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for USB1 is not avaliable on ENCORE database.

Proteins bound to RNA

USB1 RNA is bound by 14 proteins.

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eCLIP assay for USB1 is not avaliable on ENCORE database.

14 proteins are bound to USB1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	58054636	58054728	+	3'-UTR	6.81292	400.00000	K562	PTBP1
chr16	58054543	58054636	+	3'-UTR	7.33271	81.16954	K562	PTBP1
chr16	58054534	58054736	+	3'-UTR	5.51280	69.02776	HepG2	PTBP1
chr16	58054398	58054459	+	3'-UTR	7.58876	60.70493	K562	PTBP1
chr16	58054347	58054398	+	3'-UTR	6.74699	46.25217	K562	PTBP1
chr16	58054465	58054535	+	3'-UTR	5.61674	38.25150	K562	PTBP1
chr16	58054349	58054462	+	3'-UTR	5.14840	31.48342	HepG2	PTBP1
chr16	58054543	58054717	+	3'-UTR	4.79098	26.69601	K562	MATR3
chr16	58054523	58054713	+	3'-UTR	3.95853	23.85511	HepG2	MATR3
chr16	58054462	58054519	+	3'-UTR	6.49211	19.77867	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 32 entries

eCLIP assay for USB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for USB1 is not available on ENCORE database.
92 RBPs can affect the levels of USB1.

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The Knockdown/knockout RNA-Seq assay for USB1 is not available on ENCORE database.

92 RBPs can affect the gene expression of USB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
USB1	ENSG00000103005.7	2712.46910	1455.53260	0.89800	42.62300	41.14210	HepG2	ZNF622
USB1	ENSG00000103005.7	2435.76120	1277.73110	0.93070	34.57630	32.81770	HepG2	UTP3
USB1	ENSG00000103005.7	1670.61160	654.69820	1.35140	34.30880	32.55200	HepG2	RPS19
USB1	ENSG00000103005.7	3595.73930	1906.42480	0.91530	26.04180	24.77640	HepG2	RBM22
USB1	ENSG00000103005.7	3484.34960	2153.21390	0.69430	24.82250	23.71230	HepG2	SRFBP1
USB1	ENSG00000103005.7	746.97980	1362.60020	-0.86720	23.46130	21.81860	HepG2	SLBP
USB1	ENSG00000103005.7	1308.17170	705.61640	0.89050	19.50570	18.01360	K562	FXR1
USB1	ENSG00000103005.7	1969.57970	1226.31220	0.68350	17.11670	16.15360	HepG2	SRSF1
USB1	ENSG00000103005.7	2290.44330	1190.34020	0.94420	14.15120	12.84550	HepG2	DDX3X
USB1	ENSG00000103005.7	2191.04280	1128.69750	0.95690	13.94030	12.58720	HepG2	NCBP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 107 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for USB1 is not available on ENCORE database.

8 RBPs can affect the splicing of USB1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	USB1	ENSG00000103005.7	chr16	+	58048176	58048230			58043832	58044016	58051237	58051321	-0.18300	0.00000	0.00001	excluded	K562	AQR
SE	USB1	ENSG00000103005.7	chr16	+	58048176	58048230			58043832	58044016	58051237	58051284	-0.08800	0.00000	0.00095	excluded	HepG2	SRSF7
A5SS	USB1	ENSG00000103005.7	chr16	+	58052875	58053110			58052875	58052959	58054044	58055521	0.07900	0.00000	0.00001	longer	K562	AQR
MXE	USB1	ENSG00000103005.7	chr16	+	58048176	58048230	58051237	58051343	58043832	58044016	58052875	58052959	-0.16800	0.00001	0.00165	2included	HepG2	SRSF7
SE	USB1	ENSG00000103005.7	chr16	+	58048176	58048230			58043832	58044016	58051237	58051321	0.08300	0.00002	0.00126	included	HepG2	HNRNPC
SE	USB1	ENSG00000103005.7	chr16	+	58048176	58048230			58043832	58044016	58051237	58051321	0.07300	0.00005	0.02790	included	HepG2	BCCIP
SE	USB1	ENSG00000103005.7	chr16	+	58048176	58048230			58043832	58044016	58051237	58051284	0.16400	0.00007	0.00201	included	K562	HNRNPC
MXE	USB1	ENSG00000103005.7	chr16	+	58048176	58048230	58051237	58051343	58043832	58044016	58052875	58052959	-0.14800	0.00013	0.01352	2included	HepG2	NOL12
SE	USB1	ENSG00000103005.7	chr16	+	58048176	58048230			58043832	58044016	58051237	58051284	0.07900	0.00053	0.01527	included	HepG2	SRSF1
SE	USB1	ENSG00000103005.7	chr16	+	58048176	58048230			58043832	58044016	58051237	58051321	0.06300	0.00054	0.08767	included	HepG2	DDX55

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

USB1

General Information

Functions

Localization

Domains (AlphaFold: USB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for USB1 is not avaliable on ENCORE database.

14 proteins are bound to USB1 RNA:

eCLIP assay for USB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for USB1 is not available on ENCORE database.

92 RBPs can affect the gene expression of USB1 :

The Knockdown/knockout RNA-Seq assay for USB1 is not available on ENCORE database.

8 RBPs can affect the splicing of USB1 :

The Knockdown/knockout RNA-Seq assay for USB1 is not avaliable on ENCORE database.