SYNJ2BP

General Information

Gene Name : SYNJ2BP
Gene ID : ENSG00000213463.4
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SYNJ2BP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SYNJ2BP	ENSG00000213463.4	14.04	11.74	12.89	ENCSR000AEF
HepG2	SYNJ2BP	ENSG00000213463.4	10.98	15.40	13.19	ENCSR985KAT
K562	SYNJ2BP	ENSG00000213463.4	2.12	2.19	2.16	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SYNJ2BP is not avaliable on ENCORE database.

Proteins bound to RNA

SYNJ2BP RNA is bound by 3 proteins.

CanvasJS.com

eCLIP assay for SYNJ2BP is not avaliable on ENCORE database.

3 proteins are bound to SYNJ2BP RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	70863240	70863338	-	intron-Distal	4.21396	11.27642	HepG2	HNRNPL
chr14	70855206	70855324	-	CDS,intron-Distal,intron-Proximal	3.14936	3.63043	HepG2	GRWD1
chr14	70864470	70864569	-	intron-Distal	3.94917	3.18535	HepG2	LSM11
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 3 of 3 entries

eCLIP assay for SYNJ2BP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SYNJ2BP is not available on ENCORE database.
94 RBPs can affect the levels of SYNJ2BP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SYNJ2BP is not available on ENCORE database.

94 RBPs can affect the gene expression of SYNJ2BP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SYNJ2BP	ENSG00000213463.3	652.73120	187.55050	1.79910	38.11710	36.80830	HepG2	SRSF1
SYNJ2BP	ENSG00000213463.3	384.94040	168.56040	1.19130	13.31510	12.22410	HepG2	TAF15
SYNJ2BP	ENSG00000213463.3	580.47690	298.81080	0.95790	12.69210	11.74460	HepG2	RBM22
SYNJ2BP	ENSG00000213463.3	376.81200	172.57610	1.12650	12.11280	11.12830	HepG2	PTBP1
SYNJ2BP	ENSG00000213463.3	401.51740	206.27060	0.96080	11.24000	10.14060	HepG2	PUS1
SYNJ2BP	ENSG00000213463.3	312.43550	152.57690	1.03390	10.17660	9.23460	HepG2	SRSF9
SYNJ2BP	ENSG00000213463.3	383.08920	186.92230	1.03510	9.59910	8.53620	HepG2	QKI
SYNJ2BP	ENSG00000213463.3	319.72800	135.29350	1.24070	9.68670	8.28430	HepG2	PRPF8
SYNJ2BP	ENSG00000213463.3	394.17350	208.51030	0.91860	9.31100	8.25390	HepG2	SRSF5
SYNJ2BP	ENSG00000213463.3	377.92770	181.66250	1.05670	8.53240	7.23340	HepG2	CIRBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 98 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SYNJ2BP is not available on ENCORE database.

1 RBPs can affect the splicing of SYNJ2BP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	SYNJ2BP	ENSG00000213463.3	chr14	-	70855186	70855323			70842392	70842488	70883616	70883762	0.33700	0.00041	0.03409	included	HepG2	TIAL1

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SYNJ2BP

General Information

Functions

Localization

Domains (AlphaFold: SYNJ2BP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SYNJ2BP is not avaliable on ENCORE database.

3 proteins are bound to SYNJ2BP RNA:

eCLIP assay for SYNJ2BP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SYNJ2BP is not available on ENCORE database.

94 RBPs can affect the gene expression of SYNJ2BP :

The Knockdown/knockout RNA-Seq assay for SYNJ2BP is not available on ENCORE database.

1 RBPs can affect the splicing of SYNJ2BP :

The Knockdown/knockout RNA-Seq assay for SYNJ2BP is not avaliable on ENCORE database.