SERHL2

General Information

Gene Name : SERHL2
Gene ID : ENSG00000183569.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SERHL2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SERHL2	ENSG00000183569.17	2.27	0.78	1.52	ENCSR000AEF
HepG2	SERHL2	ENSG00000183569.17	1.54	0.74	1.14	ENCSR985KAT
K562	SERHL2	ENSG00000183569.17	23.29	23.51	23.40	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SERHL2 is not avaliable on ENCORE database.

Proteins bound to RNA

SERHL2 RNA is bound by 5 proteins.

CanvasJS.com

eCLIP assay for SERHL2 is not avaliable on ENCORE database.

5 proteins are bound to SERHL2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	42967966	42968040	+	intron-Distal,intron-Proximal	3.31687	6.34474	K562	EFTUD2
chr22	42967960	42968041	+	intron-Distal,intron-Proximal	4.60261	5.54520	K562	GTF2F1
chr22	42956188	42956267	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.89780	5.21950	K562	DDX24
chr22	42967216	42967283	+	3'-UTR,intron-Proximal	3.68342	3.94787	K562	AQR
chr22	42967966	42968032	+	intron-Distal,intron-Proximal	3.45862	3.18246	K562	PRPF8
chr22	42967434	42967512	+	3'-UTR,intron-Distal	4.07368	3.02181	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 6 of 6 entries

eCLIP assay for SERHL2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SERHL2 is not available on ENCORE database.
64 RBPs can affect the levels of SERHL2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SERHL2 is not available on ENCORE database.

64 RBPs can affect the gene expression of SERHL2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SERHL2	ENSG00000183569.13	183.48290	419.67090	-1.19360	15.05450	13.58020	K562	EIF2S2
SERHL2	ENSG00000183569.13	137.84840	398.74370	-1.53240	15.67970	13.06940	K562	EIF3D
SERHL2	ENSG00000183569.13	130.21320	362.44030	-1.47690	14.11090	12.40610	K562	PRPF8
SERHL2	ENSG00000183569.13	212.46600	441.90430	-1.05650	12.66920	11.47000	K562	FXR1
SERHL2	ENSG00000183569.13	641.28710	359.79410	0.83370	11.64650	10.57640	K562	AGGF1
SERHL2	ENSG00000183569.13	120.26430	289.28310	-1.26630	11.85790	10.17670	K562	U2AF2
SERHL2	ENSG00000183569.13	147.44460	369.15700	-1.32410	11.03460	9.37460	K562	RPS19
SERHL2	ENSG00000183569.13	209.35110	424.92750	-1.02130	10.26100	8.66190	K562	EIF4A3
SERHL2	ENSG00000183569.13	88.42870	285.37400	-1.69030	10.55810	8.56820	K562	EIF3A
SERHL2	ENSG00000183569.13	114.54390	288.95560	-1.33490	9.57350	8.10330	K562	G3BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SERHL2 is not available on ENCORE database.

11 RBPs can affect the splicing of SERHL2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	SERHL2	ENSG00000183569.13	chr22	+	42967126	42967907	42967126	42967209	42968441	42968535	-0.36900	0.00000	0.00002	shorter	K562	SRSF1
A5SS	SERHL2	ENSG00000183569.13	chr22	+	42967126	42967907	42967126	42967209	42968441	42968535	0.31000	0.00001	0.00304	longer	K562	HNRNPU
A5SS	SERHL2	ENSG00000183569.13	chr22	+	42967126	42967907	42967126	42967209	42968441	42968535	-0.22500	0.00002	0.01120	shorter	K562	EIF3G
A5SS	SERHL2	ENSG00000183569.13	chr22	+	42967126	42967907	42967126	42967209	42968441	42968535	-0.38100	0.00005	0.00763	shorter	K562	FXR1
SE	SERHL2	ENSG00000183569.13	chr22	+	42959394	42959487	42956191	42956271	42962309	42962344	-0.23400	0.00011	0.03258	excluded	K562	SBDS
SE	SERHL2	ENSG00000183569.13	chr22	+	42962309	42962344	42956191	42956271	42967126	42967209	0.20900	0.00019	0.03742	included	K562	DROSHA
A5SS	SERHL2	ENSG00000183569.13	chr22	+	42967126	42967907	42967126	42967209	42968441	42968535	-0.27300	0.00028	0.03766	shorter	K562	PTBP1
SE	SERHL2	ENSG00000183569.13	chr22	+	42962309	42962344	42956191	42956271	42967126	42967209	-0.26000	0.00036	0.01699	excluded	K562	HNRNPU
A5SS	SERHL2	ENSG00000183569.13	chr22	+	42967126	42967907	42967126	42967209	42968441	42968535	0.20900	0.00051	0.04274	longer	K562	HNRNPC
A5SS	SERHL2	ENSG00000183569.13	chr22	+	42967126	42967907	42967126	42967209	42968441	42968535	0.23900	0.00051	0.04953	longer	K562	AKAP8L

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SERHL2

General Information

Functions

Localization

Domains (AlphaFold: SERHL2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SERHL2 is not avaliable on ENCORE database.

5 proteins are bound to SERHL2 RNA:

eCLIP assay for SERHL2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SERHL2 is not available on ENCORE database.

64 RBPs can affect the gene expression of SERHL2 :

The Knockdown/knockout RNA-Seq assay for SERHL2 is not available on ENCORE database.

11 RBPs can affect the splicing of SERHL2 :

The Knockdown/knockout RNA-Seq assay for SERHL2 is not avaliable on ENCORE database.