PTPRC

General Information

Gene Name : PTPRC
Gene ID : ENSG00000081237.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTPRC)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTPRC	ENSG00000081237.19	102.79	106.24	104.52	ENCSR000AEF
HepG2	PTPRC	ENSG00000081237.19	0.00	0.00	0.00	ENCSR985KAT
K562	PTPRC	ENSG00000081237.19	53.07	57.94	55.50	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTPRC is not avaliable on ENCORE database.

Proteins bound to RNA

PTPRC RNA is bound by 15 proteins.

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eCLIP assay for PTPRC is not avaliable on ENCORE database.

15 proteins are bound to PTPRC RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	198725564	198725641	+	3'-UTR	5.66887	35.57843	K562	TARDBP
chr1	198725754	198725809	+	3'-UTR	5.68479	15.30625	K562	PUM2
chr1	198725461	198725525	+	3'-UTR	4.07538	13.18661	K562	PUM2
chr1	198687422	198687481	+	CDS,intron-Proximal	4.73001	10.02061	K562	PRPF8
chr1	198726053	198726107	+	3'-UTR	5.47003	9.07598	K562	PUM2
chr1	198721441	198721500	+	CDS	4.07876	8.68374	K562	YBX3
chr1	198643974	198644109	+	intron-Distal	5.25610	7.15244	K562	QKI
chr1	198611618	198611683	+	intron-Distal	4.20142	6.59655	K562	PTBP1
chr1	198611504	198611583	+	intron-Distal	4.07303	5.63677	K562	PTBP1
chr1	198704255	198704362	+	CDS,intron-Proximal	3.85085	5.57819	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 33 entries

eCLIP assay for PTPRC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTPRC is not available on ENCORE database.
85 RBPs can affect the levels of PTPRC.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTPRC is not available on ENCORE database.

85 RBPs can affect the gene expression of PTPRC :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTPRC	ENSG00000081237.14	763.40970	2165.46460	-1.50410	46.10220	43.78360	K562	HNRNPC
PTPRC	ENSG00000081237.14	1393.36420	2726.76840	-0.96860	32.16860	28.63830	K562	BCCIP
PTPRC	ENSG00000081237.14	1350.62510	3305.28270	-1.29110	31.51360	28.54700	K562	TARDBP
PTPRC	ENSG00000081237.14	630.63780	1426.58010	-1.17770	27.57740	25.27880	K562	POLR2G
PTPRC	ENSG00000081237.14	2923.90450	4871.40370	-0.73640	24.21630	21.69290	K562	EIF4G2
PTPRC	ENSG00000081237.14	1076.85020	2334.58360	-1.11630	24.35630	21.53600	K562	FIP1L1
PTPRC	ENSG00000081237.14	1813.05810	3331.31720	-0.87770	21.22450	19.45670	K562	PTBP1
PTPRC	ENSG00000081237.14	1154.87470	2533.72810	-1.13350	22.13780	19.20740	K562	RPS3
PTPRC	ENSG00000081237.14	858.54620	1859.83060	-1.11520	18.60080	16.52230	K562	PCBP3
PTPRC	ENSG00000081237.14	2700.29530	4348.62560	-0.68740	17.91790	16.38030	K562	RBM15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTPRC is not available on ENCORE database.

16 RBPs can affect the splicing of PTPRC :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PTPRC	ENSG00000081237.14	chr1	+	198668692	198668833	198661475	198661502	198672426	198672501	0.28200	0.00000	included	K562	SRSF1
SE	PTPRC	ENSG00000081237.14	chr1	+	198678815	198678953	198677261	198677390	198682081	198682201	-0.07000	0.00042	excluded	K562	AKAP8L
SE	PTPRC	ENSG00000081237.14	chr1	+	198671515	198671659	198668692	198668833	198672426	198672501	0.39600	0.00001	included	K562	AQR
SE	PTPRC	ENSG00000081237.14	chr1	+	198668692	198668833	198661475	198661502	198672426	198672501	-0.24000	0.00002	excluded	K562	ABCF1
SE	PTPRC	ENSG00000081237.14	chr1	+	198678815	198678953	198677261	198677390	198682081	198682201	-0.08600	0.00002	excluded	K562	PUS1
SE	PTPRC	ENSG00000081237.14	chr1	+	198668692	198668833	198661475	198661502	198672426	198672501	-0.17500	0.00000	excluded	K562	HNRNPL
SE	PTPRC	ENSG00000081237.14	chr1	+	198671515	198671659	198661475	198661502	198672426	198672501	0.18900	0.00156	included	K562	SBDS
SE	PTPRC	ENSG00000081237.14	chr1	+	198678815	198678953	198677261	198677390	198682081	198682201	-0.08700	0.00009	excluded	K562	RBM15
SE	PTPRC	ENSG00000081237.14	chr1	+	198671515	198671659	198668692	198668833	198672426	198672501	0.70900	0.00000	included	K562	CPSF6
SE	PTPRC	ENSG00000081237.14	chr1	+	198668692	198668833	198661475	198661502	198672426	198672501	0.27700	0.00253	included	K562	EIF3G

Showing 1 to 10 of 23 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTPRC

General Information

Functions

Localization

Domains (AlphaFold: PTPRC)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTPRC is not avaliable on ENCORE database.

15 proteins are bound to PTPRC RNA:

eCLIP assay for PTPRC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTPRC is not available on ENCORE database.

85 RBPs can affect the gene expression of PTPRC :

The Knockdown/knockout RNA-Seq assay for PTPRC is not available on ENCORE database.

16 RBPs can affect the splicing of PTPRC :

The Knockdown/knockout RNA-Seq assay for PTPRC is not avaliable on ENCORE database.