PMF1-BGLAP

General Information

Gene Name : PMF1-BGLAP
Gene ID : ENSG00000260238.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PMF1-BGLAP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PMF1-BGLAP	ENSG00000260238.6	1.49	0.83	1.16	ENCSR000AEF
HepG2	PMF1-BGLAP	ENSG00000260238.6	6.88	1.88	4.38	ENCSR985KAT
K562	PMF1-BGLAP	ENSG00000260238.6	2.14	2.59	2.37	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PMF1-BGLAP is not avaliable on ENCORE database.

Proteins bound to RNA

PMF1-BGLAP RNA is bound by 16 proteins.

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eCLIP assay for PMF1-BGLAP is not avaliable on ENCORE database.

16 proteins are bound to PMF1-BGLAP RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	156209317	156209391	+	3'-UTR,CDS,intron-Distal,intron-Proximal	6.37311	16.94863	K562	AQR
chr1	156206274	156206327	+	intron-Distal,intron-Proximal	5.79058	11.02807	K562	AQR
chr1	156203582	156203647	+	intron-Distal,intron-Proximal	3.68506	9.40811	K562	AQR
chr1	156206268	156206322	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.67791	8.96944	HepG2	PRPF8
chr1	156209611	156209699	+	3'-UTR,intron-Distal	3.28038	8.88736	HepG2	LARP4
chr1	156205987	156206126	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.80782	7.84250	HepG2	AQR
chr1	156209699	156209784	+	3'-UTR,intron-Distal	4.61100	7.73571	HepG2	LARP4
chr1	156209648	156209748	+	3'-UTR,intron-Distal	3.10861	7.72462	K562	IGF2BP2
chr1	156209632	156209747	+	3'-UTR,intron-Distal	3.64506	7.40862	HepG2	PCBP2
chr1	156206010	156206096	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.16263	7.30031	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 28 entries

eCLIP assay for PMF1-BGLAP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PMF1-BGLAP is not available on ENCORE database.
50 RBPs can affect the levels of PMF1-BGLAP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PMF1-BGLAP is not available on ENCORE database.

50 RBPs can affect the gene expression of PMF1-BGLAP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PMF1-BGLAP	ENSG00000260238.1	43.65390	2.01490	4.43720	10.03630	9.18740	HepG2	TIAL1
PMF1-BGLAP	ENSG00000260238.1	41.39030	2.08470	4.31130	7.94720	6.81830	HepG2	HNRNPC
PMF1-BGLAP	ENSG00000260238.1	33.23170	2.07100	4.00410	7.43470	6.47830	HepG2	HNRNPU
PMF1-BGLAP	ENSG00000260238.1	34.78580	1.84330	4.23800	8.06470	6.47200	HepG2	ADAR
PMF1-BGLAP	ENSG00000260238.1	30.90610	2.03010	3.92810	6.93140	6.10920	HepG2	TRIM56
PMF1-BGLAP	ENSG00000260238.1	118.69120	40.28040	1.55900	6.96340	6.07350	HepG2	PUF60
PMF1-BGLAP	ENSG00000260238.1	29.85380	1.84720	4.01440	7.04220	5.90750	HepG2	PPIL4
PMF1-BGLAP	ENSG00000260238.1	29.61130	2.15190	3.78240	6.14880	5.24940	HepG2	SMN1
PMF1-BGLAP	ENSG00000260238.1	53.81490	5.46300	3.30010	6.20390	5.15460	K562	SRSF1
PMF1-BGLAP	ENSG00000260238.1	69.13170	22.41550	1.62470	6.00690	5.04420	HepG2	SRSF7
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 54 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PMF1-BGLAP is not available on ENCORE database.

9 RBPs can affect the splicing of PMF1-BGLAP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156203418	156203519	156206078	156206274	156202110	156202216	156212343	156212382	0.09200	0.00000	0.00039	1included	HepG2	TAF15
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156195347	156195459	156202110	156202216	156182772	156182967	156203418	156203519	0.08100	0.00000	0.00022	1included	K562	HNRNPC
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156203418	156203519	156206078	156206274	156202110	156202216	156212343	156212382	-0.14100	0.00000	0.00011	2included	K562	HNRNPC
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156203418	156203519	156206078	156206274	156202110	156202216	156212343	156212382	-0.08200	0.00001	0.01511	2included	K562	CPEB4
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156202110	156202216	156203418	156203519	156182772	156182967	156206078	156206274	0.17600	0.00003	0.00191	1included	HepG2	TAF15
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156202110	156202216	156203418	156203519	156182772	156182967	156206078	156206274	-0.15900	0.00042	0.09949	2included	HepG2	FAM120A
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156195347	156195459	156203418	156203519	156182772	156182967	156206078	156206274	0.05500	0.00043	0.01037	1included	K562	HNRNPC
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156195347	156195459	156202110	156202216	156182772	156182967	156206078	156206274	0.09100	0.00047	0.01110	1included	K562	HNRNPC
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156202110	156202216	156203418	156203519	156182772	156182967	156206078	156206274	-0.16900	0.00070	0.07060	2included	HepG2	CDC40
MXE	PMF1-BGLAP	ENSG00000260238.1	chr1	+	156202110	156202216	156203418	156203519	156182772	156182967	156206078	156206274	-0.14500	0.00086	0.09605	2included	HepG2	DDX52

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PMF1-BGLAP

General Information

Functions

Localization

Domains (AlphaFold: PMF1-BGLAP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PMF1-BGLAP is not avaliable on ENCORE database.

16 proteins are bound to PMF1-BGLAP RNA:

eCLIP assay for PMF1-BGLAP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PMF1-BGLAP is not available on ENCORE database.

50 RBPs can affect the gene expression of PMF1-BGLAP :

The Knockdown/knockout RNA-Seq assay for PMF1-BGLAP is not available on ENCORE database.

9 RBPs can affect the splicing of PMF1-BGLAP :

The Knockdown/knockout RNA-Seq assay for PMF1-BGLAP is not avaliable on ENCORE database.