NCKIPSD

General Information

Gene Name : NCKIPSD
Gene ID : ENSG00000213672.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NCKIPSD)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NCKIPSD	ENSG00000213672.7	3.35	7.94	5.65	ENCSR000AEF
HepG2	NCKIPSD	ENSG00000213672.7	26.45	12.52	19.48	ENCSR985KAT
K562	NCKIPSD	ENSG00000213672.7	11.70	10.10	10.90	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NCKIPSD is not avaliable on ENCORE database.

Proteins bound to RNA

NCKIPSD RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for NCKIPSD is not avaliable on ENCORE database.

18 proteins are bound to NCKIPSD RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	48717638	48717741	-	CDS,intron-Distal,intron-Proximal	6.09044	17.94355	HepG2	SF3A3
chr3	48716405	48716461	-	intron-Distal,intron-Proximal	5.57816	16.57518	K562	SF3B4
chr3	48717553	48717619	-	CDS,intron-Distal	5.65866	15.16547	K562	LIN28B
chr3	48717636	48717723	-	CDS,intron-Distal,intron-Proximal	4.55843	11.66069	K562	SF3B4
chr3	48711299	48711393	-	3'-UTR,intron-Distal	6.06224	11.25684	K562	PUM2
chr3	48717240	48717299	-	CDS,intron-Distal,intron-Proximal	4.20312	8.12130	HepG2	PPIG
chr3	48716309	48716365	-	CDS,intron-Distal,intron-Proximal	4.02125	7.26626	HepG2	PPIG
chr3	48716445	48716499	-	CDS,intron-Distal,intron-Proximal	3.03387	6.92749	HepG2	PRPF8
chr3	48718172	48718256	-	intron-Distal	4.95443	6.78736	HepG2	PRPF4
chr3	48719960	48720035	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.58994	6.71722	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 44 entries

eCLIP assay for NCKIPSD is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NCKIPSD is not available on ENCORE database.
81 RBPs can affect the levels of NCKIPSD.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NCKIPSD is not available on ENCORE database.

81 RBPs can affect the gene expression of NCKIPSD :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NCKIPSD	ENSG00000213672.3	448.11550	849.15130	-0.92220	18.39980	16.90480	HepG2	UPF1
NCKIPSD	ENSG00000213672.3	417.23220	836.13790	-1.00290	17.15970	16.09370	HepG2	RBM22
NCKIPSD	ENSG00000213672.3	445.18480	820.84980	-0.88270	15.11730	13.80010	HepG2	DKC1
NCKIPSD	ENSG00000213672.3	46.04550	192.94960	-2.06710	14.31100	12.42010	K562	G3BP2
NCKIPSD	ENSG00000213672.3	547.76200	946.37540	-0.78890	11.23760	10.17000	HepG2	SF3B4
NCKIPSD	ENSG00000213672.3	551.63370	987.86010	-0.84060	10.72840	9.92960	HepG2	SRSF1
NCKIPSD	ENSG00000213672.3	844.41920	507.40640	0.73470	10.99980	9.67320	HepG2	DNAJC21
NCKIPSD	ENSG00000213672.3	439.25230	888.06330	-1.01560	10.44250	9.46500	HepG2	TAF15
NCKIPSD	ENSG00000213672.3	1465.67270	810.56400	0.85450	9.89720	8.81760	HepG2	EIF2S1
NCKIPSD	ENSG00000213672.3	654.68070	1138.53830	-0.79830	10.06080	8.48360	K562	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 89 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NCKIPSD is not available on ENCORE database.

12 RBPs can affect the splicing of NCKIPSD :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	NCKIPSD	ENSG00000213672.3	chr3	-	48719477	48719629	48719477	48719589	48719780	48719985	0.21500	0.00000	0.00004	longer	K562	AGGF1
A3SS	NCKIPSD	ENSG00000213672.3	chr3	-	48719477	48719589	48719477	48719568	48719780	48719985	-0.59800	0.00000	0.00092	shorter	HepG2	HNRNPU
A3SS	NCKIPSD	ENSG00000213672.3	chr3	-	48719477	48719629	48719477	48719589	48719780	48719985	0.18100	0.00000	0.00003	longer	K562	PUS1
RI	NCKIPSD	ENSG00000213672.3	chr3	-	48716309	48716616	48716309	48716402	48716487	48716616	0.07700	0.00007	0.00305	included	HepG2	KHSRP
RI	NCKIPSD	ENSG00000213672.3	chr3	-	48716309	48716616	48716309	48716402	48716487	48716616	0.19300	0.00012	0.00259	included	HepG2	PRPF8
A3SS	NCKIPSD	ENSG00000213672.3	chr3	-	48719477	48719589	48719477	48719568	48719780	48719985	-0.45800	0.00029	0.05045	shorter	HepG2	TIAL1
SE	NCKIPSD	ENSG00000213672.3	chr3	-	48716809	48716890	48716487	48716616	48717007	48717146	-0.14900	0.00035	0.01999	excluded	HepG2	SF3B4
RI	NCKIPSD	ENSG00000213672.3	chr3	-	48716309	48716616	48716309	48716402	48716487	48716616	0.10000	0.00036	0.01284	included	HepG2	FTO
A3SS	NCKIPSD	ENSG00000213672.3	chr3	-	48719477	48719629	48719477	48719589	48719780	48719985	0.11400	0.00053	0.07292	longer	K562	UTP18
A3SS	NCKIPSD	ENSG00000213672.3	chr3	-	48719477	48719589	48719477	48719568	48719780	48719985	-0.20700	0.00061	0.05485	shorter	K562	AGGF1

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NCKIPSD

General Information

Functions

Localization

Domains (AlphaFold: NCKIPSD)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NCKIPSD is not avaliable on ENCORE database.

18 proteins are bound to NCKIPSD RNA:

eCLIP assay for NCKIPSD is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NCKIPSD is not available on ENCORE database.

81 RBPs can affect the gene expression of NCKIPSD :

The Knockdown/knockout RNA-Seq assay for NCKIPSD is not available on ENCORE database.

12 RBPs can affect the splicing of NCKIPSD :

The Knockdown/knockout RNA-Seq assay for NCKIPSD is not avaliable on ENCORE database.