FIGNL1

General Information

Gene Name : FIGNL1
Gene ID : ENSG00000132436.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FIGNL1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FIGNL1	ENSG00000132436.11	26.22	19.92	23.07	ENCSR000AEF
HepG2	FIGNL1	ENSG00000132436.11	7.00	11.84	9.42	ENCSR985KAT
K562	FIGNL1	ENSG00000132436.11	20.56	20.68	20.62	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FIGNL1 is not avaliable on ENCORE database.

Proteins bound to RNA

FIGNL1 RNA is bound by 3 proteins.

CanvasJS.com

eCLIP assay for FIGNL1 is not avaliable on ENCORE database.

3 proteins are bound to FIGNL1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	50515958	50516016	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	5.26427	6.75320	K562	AQR
chr7	50514940	50515038	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.62971	6.26686	K562	SF3B4
chr7	50513233	50513306	-	CDS,intron-Distal	3.72508	5.03335	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 3 of 3 entries

eCLIP assay for FIGNL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FIGNL1 is not available on ENCORE database.
94 RBPs can affect the levels of FIGNL1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FIGNL1 is not available on ENCORE database.

94 RBPs can affect the gene expression of FIGNL1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FIGNL1	ENSG00000132436.7	122.13710	416.10560	-1.76840	31.43690	30.10740	HepG2	ZNF622
FIGNL1	ENSG00000132436.7	174.09950	502.90210	-1.53040	25.57070	24.44800	HepG2	SRFBP1
FIGNL1	ENSG00000132436.7	481.84730	190.19390	1.34100	18.74880	17.74620	HepG2	SRSF1
FIGNL1	ENSG00000132436.7	98.11120	308.86860	-1.65450	18.64580	17.55960	HepG2	TIAL1
FIGNL1	ENSG00000132436.7	138.04090	395.38970	-1.51820	17.46460	16.03870	HepG2	RPLP0
FIGNL1	ENSG00000132436.7	138.99330	333.07440	-1.26080	15.23770	13.93930	HepG2	CKAP4
FIGNL1	ENSG00000132436.7	627.80930	1157.60140	-0.88270	15.93620	13.74110	K562	SF3B4
FIGNL1	ENSG00000132436.7	161.81580	360.56850	-1.15590	13.48000	12.14580	HepG2	SRSF7
FIGNL1	ENSG00000132436.7	121.31150	385.59650	-1.66840	13.11360	11.82200	HepG2	SUPV3L1
FIGNL1	ENSG00000132436.7	180.73260	378.34360	-1.06580	12.23830	10.96150	HepG2	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 109 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FIGNL1 is not available on ENCORE database.

6 RBPs can affect the splicing of FIGNL1 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	FIGNL1	ENSG00000132436.7	chr7	-	50515665	50515753	50514880	50514995	50515878	50515987	-0.28800	0.00000	0.00015	excluded	K562	HNRNPC
SE	FIGNL1	ENSG00000132436.7	chr7	-	50515665	50515753	50514880	50514995	50515878	50515987	0.08800	0.00022	0.02869	included	HepG2	DDX59
SE	FIGNL1	ENSG00000132436.7	chr7	-	50515665	50515753	50514880	50514995	50515878	50516026	-0.20800	0.00086	0.02450	excluded	K562	AGGF1
SE	FIGNL1	ENSG00000132436.7	chr7	-	50515665	50515753	50514880	50514995	50515878	50516026	-0.19300	0.00164	0.04635	excluded	K562	AKAP8L
SE	FIGNL1	ENSG00000132436.7	chr7	-	50515878	50515987	50511830	50514995	50517998	50518066	-0.44500	0.00304	0.05048	excluded	K562	SF3B4
SE	FIGNL1	ENSG00000132436.7	chr7	-	50516815	50517421	50515878	50515987	50517998	50518088	-0.26300	0.00644	0.09823	excluded	K562	U2AF1

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FIGNL1

General Information

Functions

Localization

Domains (AlphaFold: FIGNL1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FIGNL1 is not avaliable on ENCORE database.

3 proteins are bound to FIGNL1 RNA:

eCLIP assay for FIGNL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FIGNL1 is not available on ENCORE database.

94 RBPs can affect the gene expression of FIGNL1 :

The Knockdown/knockout RNA-Seq assay for FIGNL1 is not available on ENCORE database.

6 RBPs can affect the splicing of FIGNL1 :

The Knockdown/knockout RNA-Seq assay for FIGNL1 is not avaliable on ENCORE database.