XAB2

General Information

Gene Name : XAB2
Gene ID : ENSG00000076924.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: XAB2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	XAB2	ENSG00000076924.11	1.48	7.72	4.60	ENCSR000AEF
HepG2	XAB2	ENSG00000076924.11	34.37	6.82	20.59	ENCSR985KAT
K562	XAB2	ENSG00000076924.11	24.46	13.46	18.96	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for XAB2 is not avaliable on ENCORE database.

Proteins bound to RNA

XAB2 RNA is bound by 22 proteins.

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eCLIP assay for XAB2 is not avaliable on ENCORE database.

22 proteins are bound to XAB2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	7685917	7685978	-	CDS,intron-Distal,intron-Proximal	7.61434	37.06975	K562	SF3B4
chr19	7692484	7692594	-	intron-Distal,intron-Proximal	5.81681	13.60698	HepG2	RBFOX2
chr19	7694247	7694363	-	intron-Distal	6.04568	11.02807	K562	AQR
chr19	7690931	7690984	-	intron-Distal,intron-Proximal	4.52371	10.68651	K562	SF3B4
chr19	7685344	7685405	-	intron-Distal,intron-Proximal	4.81512	10.44900	K562	SF3B4
chr19	7687177	7687246	-	CDS,intron-Distal,intron-Proximal	4.43435	10.32997	HepG2	PRPF8
chr19	7692498	7692552	-	intron-Distal,intron-Proximal	5.70859	10.04245	K562	AQR
chr19	7689300	7689403	-	CDS,intron-Distal,intron-Proximal	4.40823	9.62011	K562	SF3B4
chr19	7686041	7686108	-	CDS,intron-Distal	4.72393	9.05846	K562	FMR1
chr19	7694276	7694385	-	CDS,intron-Distal	3.37959	8.70001	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 54 entries

eCLIP assay for XAB2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for XAB2 is not available on ENCORE database.
94 RBPs can affect the levels of XAB2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for XAB2 is not available on ENCORE database.

94 RBPs can affect the gene expression of XAB2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
XAB2	ENSG00000076924.7	3780.50200	2091.00840	0.85430	17.30610	16.00760	K562	AGGF1
XAB2	ENSG00000076924.7	626.75050	314.39330	0.99520	17.05720	15.65380	HepG2	SAFB2
XAB2	ENSG00000076924.7	4268.94830	2157.44110	0.98450	14.62730	13.41700	K562	PUS1
XAB2	ENSG00000076924.7	642.13610	346.12320	0.89150	14.16390	13.02920	HepG2	TRIM56
XAB2	ENSG00000076924.7	581.18820	1013.12700	-0.80170	12.84010	11.88750	HepG2	RBM22
XAB2	ENSG00000076924.7	1398.66330	670.46550	1.06070	13.82770	11.87670	K562	TIA1
XAB2	ENSG00000076924.7	806.45150	478.67920	0.75240	13.14930	11.81360	HepG2	SLBP
XAB2	ENSG00000076924.7	1078.00210	597.71300	0.85070	14.19100	11.58200	K562	CSTF2
XAB2	ENSG00000076924.7	326.47410	754.07780	-1.20770	11.99460	10.95430	HepG2	TAF15
XAB2	ENSG00000076924.7	812.83340	492.90960	0.72150	11.18890	10.04350	HepG2	SRSF5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 108 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for XAB2 is not available on ENCORE database.

10 RBPs can affect the splicing of XAB2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	XAB2	ENSG00000076924.7	chr19	-	7689186	7689431	7689186	7689331	7690765	7690897	0.07200	0.00000	0.00000	longer	K562	AQR
A3SS	XAB2	ENSG00000076924.7	chr19	-	7693035	7693253	7693035	7693184	7694362	7694451	0.09800	0.00000	0.00000	longer	K562	AQR
RI	XAB2	ENSG00000076924.7	chr19	-	7690765	7691156	7690765	7690930	7691021	7691156	0.11500	0.00000	0.00000	included	K562	PUS1
RI	XAB2	ENSG00000076924.7	chr19	-	7690765	7691156	7690765	7690930	7691021	7691156	0.17700	0.00000	0.00003	included	HepG2	U2AF2
RI	XAB2	ENSG00000076924.7	chr19	-	7690765	7691156	7690765	7690930	7691021	7691156	0.14800	0.00000	0.00001	included	K562	AQR
RI	XAB2	ENSG00000076924.7	chr19	-	7685160	7685555	7685160	7685332	7685432	7685555	0.11700	0.00000	0.00000	included	K562	AQR
SE	XAB2	ENSG00000076924.7	chr19	-	7688616	7688768	7688055	7688175	7689186	7689331	-0.08600	0.00002	0.00034	excluded	K562	AQR
A3SS	XAB2	ENSG00000076924.7	chr19	-	7688055	7688215	7688055	7688175	7688616	7688768	0.08900	0.00002	0.00020	longer	K562	AQR
RI	XAB2	ENSG00000076924.7	chr19	-	7690765	7691156	7690765	7690930	7691021	7691156	0.06800	0.00003	0.00080	included	K562	UTP18
RI	XAB2	ENSG00000076924.7	chr19	-	7690765	7691156	7690765	7690930	7691021	7691156	0.12500	0.00016	0.00270	included	K562	EFTUD2

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

XAB2

General Information

Functions

Localization

Domains (AlphaFold: XAB2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for XAB2 is not avaliable on ENCORE database.

22 proteins are bound to XAB2 RNA:

eCLIP assay for XAB2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for XAB2 is not available on ENCORE database.

94 RBPs can affect the gene expression of XAB2 :

The Knockdown/knockout RNA-Seq assay for XAB2 is not available on ENCORE database.

10 RBPs can affect the splicing of XAB2 :

The Knockdown/knockout RNA-Seq assay for XAB2 is not avaliable on ENCORE database.