UBA6

General Information

Gene Name : UBA6
Gene ID : ENSG00000033178.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: UBA6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	UBA6	ENSG00000033178.12	36.36	23.88	30.12	ENCSR000AEF
HepG2	UBA6	ENSG00000033178.12	20.44	20.49	20.46	ENCSR985KAT
K562	UBA6	ENSG00000033178.12	52.86	58.23	55.55	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for UBA6 is not avaliable on ENCORE database.

Proteins bound to RNA

UBA6 RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for UBA6 is not avaliable on ENCORE database.

26 proteins are bound to UBA6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	68521904	68521935	-	intron-Distal	6.88000	29.76308	K562	EXOSC5
chr4	68520217	68520352	-	intron-Distal	5.04400	26.63701	K562	EXOSC5
chr4	68527032	68527133	-	intron-Distal	4.23897	21.65614	K562	HNRNPL
chr4	68527912	68528029	-	CDS,intron-Distal,intron-Proximal	3.17292	20.67996	K562	SF3B4
chr4	68500149	68500209	-	CDS,intron-Distal	4.93210	19.60770	HepG2	BCLAF1
chr4	68521935	68521952	-	intron-Distal	4.97096	18.95590	K562	EXOSC5
chr4	68544155	68544245	-	CDS,intron-Distal,intron-Proximal	4.79480	17.19051	HepG2	BCLAF1
chr4	68544156	68544253	-	CDS,intron-Distal,intron-Proximal	3.40684	17.04672	K562	DDX24
chr4	68516913	68516958	-	intron-Distal	3.98256	15.58238	K562	EXOSC5
chr4	68527047	68527136	-	intron-Distal	3.36025	14.89073	HepG2	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 165 entries

eCLIP assay for UBA6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for UBA6 is not available on ENCORE database.
127 RBPs can affect the levels of UBA6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for UBA6 is not available on ENCORE database.

127 RBPs can affect the gene expression of UBA6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
UBA6	ENSG00000033178.8	2153.11420	6142.34880	-1.51240	50.61960	48.40410	K562	AQR
UBA6	ENSG00000033178.8	2040.21500	3754.85620	-0.88000	38.21680	35.82410	K562	MTPAP
UBA6	ENSG00000033178.8	2170.33550	4795.57680	-1.14380	34.80610	32.00960	K562	GRSF1
UBA6	ENSG00000033178.8	536.77440	1321.31930	-1.29960	26.78670	25.15080	HepG2	HNRNPA1
UBA6	ENSG00000033178.8	1096.07660	1798.77750	-0.71470	19.75610	18.37910	HepG2	PUS1
UBA6	ENSG00000033178.8	2977.17260	4171.92710	-0.48680	19.65320	17.92280	K562	NSUN2
UBA6	ENSG00000033178.8	641.00040	1473.20530	-1.20060	18.56260	17.05580	HepG2	GPKOW
UBA6	ENSG00000033178.8	843.17640	1796.34240	-1.09120	18.57670	16.78320	HepG2	CIRBP
UBA6	ENSG00000033178.8	869.61190	1459.99620	-0.74750	17.91520	16.47440	HepG2	HNRNPU
UBA6	ENSG00000033178.8	932.42860	1550.75210	-0.73390	17.47080	16.15790	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 154 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for UBA6 is not available on ENCORE database.

18 RBPs can affect the splicing of UBA6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	UBA6	ENSG00000033178.8	chr4	-	68506868	68506946	68504660	68504842	68510415	68510496	0.14900	0.00000	included	K562	SRSF1
SE	UBA6	ENSG00000033178.8	chr4	-	68506868	68506946	68504660	68504842	68510415	68510496	-0.36600	0.00000	excluded	K562	SF3B4
SE	UBA6	ENSG00000033178.8	chr4	-	68506868	68506946	68504660	68504842	68510415	68510496	-0.21200	0.00001	excluded	K562	AKAP8L
SE	UBA6	ENSG00000033178.8	chr4	-	68500146	68500236	68499959	68500040	68504660	68504842	-0.20400	0.00000	excluded	K562	AQR
SE	UBA6	ENSG00000033178.8	chr4	-	68497574	68497626	68497425	68497489	68499062	68499191	-0.22000	0.00001	excluded	K562	AQR
SE	UBA6	ENSG00000033178.8	chr4	-	68528856	68528933	68527380	68527973	68529602	68529665	-0.10500	0.00017	excluded	K562	PUS1
SE	UBA6	ENSG00000033178.8	chr4	-	68506868	68506946	68504660	68504842	68510415	68510496	-0.23000	0.00000	excluded	K562	PUS1
SE	UBA6	ENSG00000033178.8	chr4	-	68492077	68492195	68490711	68490905	68494788	68494823	-0.07000	0.00000	excluded	K562	PUS1
SE	UBA6	ENSG00000033178.8	chr4	-	68506868	68506946	68504660	68504842	68510415	68510496	-0.24500	0.00014	excluded	K562	U2AF1
SE	UBA6	ENSG00000033178.8	chr4	-	68492077	68492195	68490711	68490905	68494788	68494823	-0.12100	0.00000	excluded	K562	U2AF1

Showing 1 to 10 of 50 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

UBA6

General Information

Functions

Localization

Domains (AlphaFold: UBA6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for UBA6 is not avaliable on ENCORE database.

26 proteins are bound to UBA6 RNA:

eCLIP assay for UBA6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for UBA6 is not available on ENCORE database.

127 RBPs can affect the gene expression of UBA6 :

The Knockdown/knockout RNA-Seq assay for UBA6 is not available on ENCORE database.

18 RBPs can affect the splicing of UBA6 :

The Knockdown/knockout RNA-Seq assay for UBA6 is not avaliable on ENCORE database.