TCF25

General Information

Gene Name : TCF25
Gene ID : ENSG00000141002.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TCF25)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TCF25	ENSG00000141002.19	26.96	55.87	41.41	ENCSR000AEF
HepG2	TCF25	ENSG00000141002.19	130.13	71.71	100.92	ENCSR985KAT
K562	TCF25	ENSG00000141002.19	69.90	58.82	64.36	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TCF25 is not avaliable on ENCORE database.

Proteins bound to RNA

TCF25 RNA is bound by 60 proteins.

CanvasJS.com

eCLIP assay for TCF25 is not avaliable on ENCORE database.

60 proteins are bound to TCF25 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	89961403	89961460	+	CDS,intron-Proximal	5.14118	400.00000	HepG2	SF3A3
chr16	89967521	89967577	+	intron-Distal	5.98184	400.00000	HepG2	FKBP4
chr16	89974785	89974900	+	intron-Distal	7.65145	134.45172	HepG2	PCBP2
chr16	89974790	89974898	+	intron-Distal	6.94889	92.00598	HepG2	DDX59
chr16	89967492	89967521	+	intron-Distal	6.17724	85.65604	HepG2	FKBP4
chr16	89974657	89974752	+	intron-Distal	8.52706	83.66705	HepG2	PCBP2
chr16	89973738	89973849	+	intron-Distal,intron-Proximal	6.41691	77.20374	HepG2	DDX59
chr16	89974902	89974998	+	intron-Distal	6.85059	76.74960	HepG2	PCBP2
chr16	89974608	89974735	+	intron-Distal	6.33321	74.58431	HepG2	DDX59
chr16	89974482	89974543	+	intron-Distal	6.77897	72.79892	HepG2	PCBP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 438 entries

eCLIP assay for TCF25 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TCF25 is not available on ENCORE database.
86 RBPs can affect the levels of TCF25.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TCF25 is not available on ENCORE database.

86 RBPs can affect the gene expression of TCF25 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TCF25	ENSG00000141002.14	3965.78960	1793.99630	1.14430	27.25010	25.29320	HepG2	HNRNPK
TCF25	ENSG00000141002.14	3509.80670	1811.22870	0.95430	20.46380	19.06650	HepG2	BOP1
TCF25	ENSG00000141002.14	3083.40170	1948.87790	0.66180	19.90610	18.51830	HepG2	PCBP1
TCF25	ENSG00000141002.14	1965.83830	1219.71730	0.68850	19.84110	18.33740	HepG2	SAFB2
TCF25	ENSG00000141002.14	2151.92540	1342.77520	0.68030	18.51780	17.22880	HepG2	TRIM56
TCF25	ENSG00000141002.14	3362.28830	1711.92150	0.97370	16.65070	15.27840	HepG2	EIF2S1
TCF25	ENSG00000141002.14	263.16680	679.46010	-1.36840	15.31090	13.33690	K562	G3BP2
TCF25	ENSG00000141002.14	2020.12560	1399.04760	0.52990	14.03370	12.52320	HepG2	ILF2
TCF25	ENSG00000141002.14	3060.15640	1949.16710	0.65060	11.68520	10.36010	HepG2	RBM25
TCF25	ENSG00000141002.14	2385.96420	3247.39450	-0.44470	11.14700	10.32320	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 98 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TCF25 is not available on ENCORE database.

43 RBPs can affect the splicing of TCF25 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	TCF25	ENSG00000141002.14	chr16	+	89944868	89945035	89940051	89940267	89949758	89949920	-0.26100	0.00085	excluded	K562	IGF2BP2
SE	TCF25	ENSG00000141002.14	chr16	+	89960135	89960266	89958600	89958683	89961445	89961545	-0.28200	0.00001	excluded	K562	SRSF1
SE	TCF25	ENSG00000141002.14	chr16	+	89960135	89960266	89958600	89958683	89961445	89961545	-0.14700	0.00004	excluded	HepG2	RBM22
SE	TCF25	ENSG00000141002.14	chr16	+	89944868	89945035	89940051	89940267	89949758	89949920	-0.27100	0.00053	excluded	K562	TIA1
SE	TCF25	ENSG00000141002.14	chr16	+	89944868	89945035	89940051	89940267	89949758	89949920	-0.29500	0.00000	excluded	K562	MATR3
SE	TCF25	ENSG00000141002.14	chr16	+	89944868	89945035	89940051	89940267	89949758	89949920	-0.10100	0.00001	excluded	K562	AKAP8L
SE	TCF25	ENSG00000141002.14	chr16	+	89944868	89945035	89940051	89940267	89949758	89949920	0.39900	0.00000	included	HepG2	HNRNPK
SE	TCF25	ENSG00000141002.14	chr16	+	89944868	89945035	89940051	89940267	89949758	89949920	-0.11400	0.00000	excluded	HepG2	AKAP1
SE	TCF25	ENSG00000141002.14	chr16	+	89960135	89960266	89958565	89958683	89961445	89961545	-0.20300	0.00006	excluded	K562	AQR
SE	TCF25	ENSG00000141002.14	chr16	+	89944868	89945035	89940051	89940267	89949758	89949920	-0.11300	0.00000	excluded	K562	PUS1

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TCF25

General Information

Functions

Localization

Domains (AlphaFold: TCF25)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TCF25 is not avaliable on ENCORE database.

60 proteins are bound to TCF25 RNA:

eCLIP assay for TCF25 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TCF25 is not available on ENCORE database.

86 RBPs can affect the gene expression of TCF25 :

The Knockdown/knockout RNA-Seq assay for TCF25 is not available on ENCORE database.

43 RBPs can affect the splicing of TCF25 :

The Knockdown/knockout RNA-Seq assay for TCF25 is not avaliable on ENCORE database.