TAPBP

General Information

Gene Name : TAPBP
Gene ID : ENSG00000231925.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TAPBP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TAPBP	ENSG00000231925.11	22.33	33.63	27.98	ENCSR000AEF
HepG2	TAPBP	ENSG00000231925.11	27.10	15.17	21.14	ENCSR985KAT
K562	TAPBP	ENSG00000231925.11	19.39	15.48	17.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TAPBP is not avaliable on ENCORE database.

Proteins bound to RNA

TAPBP RNA is bound by 29 proteins.

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eCLIP assay for TAPBP is not avaliable on ENCORE database.

29 proteins are bound to TAPBP RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	33267762	33267904	-	3'-UTR,intron-Distal	4.28314	50.68715	K562	PCBP1
chr6	33267757	33267859	-	3'-UTR,intron-Distal	3.77328	44.09087	K562	PABPC4
chr6	33281596	33281642	-	CDS,intron-Distal,intron-Proximal	4.49892	43.89279	HepG2	DDX3X
chr6	33281780	33281842	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.03681	42.43989	HepG2	DDX3X
chr6	33269407	33269466	-	3'-UTR,intron-Distal,intron-Proximal	4.41157	40.90077	HepG2	PCBP2
chr6	33267838	33267903	-	3'-UTR,intron-Distal	3.53015	36.41359	K562	IGF2BP2
chr6	33267747	33267838	-	3'-UTR,intron-Distal	3.67498	36.12590	K562	IGF2BP2
chr6	33267695	33267781	-	3'-UTR,intron-Distal	3.68097	33.67403	K562	PUM2
chr6	33267796	33267854	-	3'-UTR,intron-Distal	4.08343	32.56759	HepG2	PCBP2
chr6	33267752	33267878	-	3'-UTR,intron-Distal	3.18001	30.80752	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 120 entries

eCLIP assay for TAPBP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TAPBP is not available on ENCORE database.
127 RBPs can affect the levels of TAPBP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TAPBP is not available on ENCORE database.

127 RBPs can affect the gene expression of TAPBP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TAPBP	ENSG00000231925.7	1181.18320	3373.20690	-1.51390	43.49830	40.94790	HepG2	U2AF1
TAPBP	ENSG00000231925.7	3585.97010	1445.82890	1.31040	39.65070	37.76890	HepG2	HNRNPA1
TAPBP	ENSG00000231925.7	5828.79130	3371.12420	0.78990	37.71740	35.75850	HepG2	UPF1
TAPBP	ENSG00000231925.7	4434.51940	2877.38610	0.62390	31.60570	29.54210	K562	NSUN2
TAPBP	ENSG00000231925.7	3345.50310	2040.81080	0.71300	30.27910	28.34360	HepG2	HNRNPL
TAPBP	ENSG00000231925.7	2616.70740	1456.01850	0.84560	21.49800	19.78240	K562	EIF2S2
TAPBP	ENSG00000231925.7	2532.32210	1566.27290	0.69300	20.63890	19.27920	HepG2	TRIM56
TAPBP	ENSG00000231925.7	3886.64470	2589.65310	0.58570	18.19800	16.38360	K562	MTPAP
TAPBP	ENSG00000231925.7	4515.72640	3050.94960	0.56560	17.64760	16.00330	K562	UPF1
TAPBP	ENSG00000231925.7	1232.43780	2039.08860	-0.72640	17.16590	15.77230	K562	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 160 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TAPBP is not available on ENCORE database.

20 RBPs can affect the splicing of TAPBP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TAPBP	ENSG00000231925.7	chr6	-	33271904	33271994			33269461	33269548	33272073	33272415	-0.39600	0.00000	0.00001	excluded	HepG2	U2AF1
SE	TAPBP	ENSG00000231925.7	chr6	-	33271731	33271766			33269461	33269548	33272073	33272415	-0.24900	0.00000	0.00009	excluded	K562	SUPV3L1
SE	TAPBP	ENSG00000231925.7	chr6	-	33271904	33271994			33269461	33269548	33272073	33272415	-0.36500	0.00000	0.00108	excluded	HepG2	PCBP2
SE	TAPBP	ENSG00000231925.7	chr6	-	33280993	33281254			33272765	33273164	33281470	33281641	-0.13200	0.00000	0.00000	excluded	HepG2	SF3A3
SE	TAPBP	ENSG00000231925.7	chr6	-	33271904	33271994			33269461	33269548	33272073	33272415	-0.44400	0.00000	0.00000	excluded	HepG2	PCBP1
SE	TAPBP	ENSG00000231925.7	chr6	-	33271904	33271994			33269461	33269548	33272073	33272415	-0.27500	0.00000	0.00027	excluded	K562	UPF1
SE	TAPBP	ENSG00000231925.7	chr6	-	33271904	33271994			33269461	33269548	33272073	33272415	-0.26500	0.00001	0.00034	excluded	HepG2	HNRNPK
SE	TAPBP	ENSG00000231925.7	chr6	-	33280993	33281254			33272765	33273164	33281470	33281641	-0.07300	0.00001	0.00188	excluded	K562	HNRNPL
MXE	TAPBP	ENSG00000231925.7	chr6	-	33271904	33271994	33272073	33272415	33271349	33271766	33272765	33273164	0.11100	0.00002	0.00388	1included	K562	HNRNPL
SE	TAPBP	ENSG00000231925.7	chr6	-	33280993	33281254			33272765	33273164	33281470	33281617	-0.14100	0.00003	0.00242	excluded	HepG2	SF3B4

Showing 1 to 10 of 24 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TAPBP

General Information

Functions

Localization

Domains (AlphaFold: TAPBP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TAPBP is not avaliable on ENCORE database.

29 proteins are bound to TAPBP RNA:

eCLIP assay for TAPBP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TAPBP is not available on ENCORE database.

127 RBPs can affect the gene expression of TAPBP :

The Knockdown/knockout RNA-Seq assay for TAPBP is not available on ENCORE database.

20 RBPs can affect the splicing of TAPBP :

The Knockdown/knockout RNA-Seq assay for TAPBP is not avaliable on ENCORE database.