SUPT5H

General Information

Gene Name : SUPT5H
Gene ID : ENSG00000196235.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SUPT5H)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SUPT5H	ENSG00000196235.13	37.03	59.98	48.50	ENCSR000AEF
HepG2	SUPT5H	ENSG00000196235.13	64.43	38.73	51.58	ENCSR985KAT
K562	SUPT5H	ENSG00000196235.13	49.80	47.39	48.59	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
SUPT5H	K562	CRISPR	BGKcLV37-49,BGKcLV37-50	BGKcLV37-1,BGKcLV37-2	0.0,0.0	NotSatisfied	ENCORE2
SUPT5H	K562	CRISPR	BGKcLV44-75,BGKcLV44-76	BGKcLV44-1,BGKcLV44-2	0.0,0.0	NotSatisfied	ENCORE2
SUPT5H	K562	CRISPR	BGKcLV46-95,BGKcLV46-96	BGKcLV46-1,BGKcLV46-2	37.1,47.3	NotSatisfied	ENCORE2
SUPT5H	K562	CRISPR	BGKcLV46-97,BGKcLV46-98	BGKcLV46-1,BGKcLV46-2	38.5,43.5	NotSatisfied	ENCORE2
SUPT5H	HepG2	CRISPR	BGHcLV36-47,BGHcLV36-48	BGHcLV36-1,BGHcLV36-2	NO CLEAR BAND ON THE POSITION,	NotSatisfied	ENCORE2
SUPT5H	HepG2	CRISPR	BGHcLV45-69,BGHcLV45-70	BGHcLV45-1,BGHcLV45-2	0.0,0.0	NotSatisfied	ENCORE2
SUPT5H	HepG2	CRISPR	BGHcLV45-71,BGHcLV45-72	BGHcLV45-1,BGHcLV45-2	0.0,0.0	NotSatisfied	ENCORE2
SUPT5H	HepG2	CRISPR	BGHcLV47-75,BGHcLV47-76	BGHcLV47-1,BGHcLV47-2	?,	NotSatisfied	ENCORE2
SUPT5H	293T	shRNA	BG293LV02-47,BG293LV02-48	BG293LV02-1,BG293LV02-2		NotSatisfied	ENCORE2
SUPT5H	293T	shRNA	BG293LV03-17,BG293LV03-18	BG293LV03-1,BG293LV03-2		NotSatisfied	ENCORE2
SUPT5H	293T	shRNA	BG293LV04-81,BG293LV04-82	BG293LV04-1,BG293LV04-2		NotSatisfied	ENCORE2
SUPT5H	293T	shRNA	BG293LV04-83,BG293LV04-84	BG293LV04-1,BG293LV04-2		NotSatisfied	ENCORE2
SUPT5H	293T	shRNA	BG293LV05-109,BG293LV05-110	BG293LV05-1,BG293LV05-2		NotSatisfied	ENCORE2
SUPT5H	293T	shRNA	BG293LV05-113,BG293LV05-114	BG293LV05-1,BG293LV05-2		NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SUPT5H is not avaliable on ENCORE database.

Proteins bound to RNA

SUPT5H RNA is bound by 47 proteins.

CanvasJS.com

eCLIP assay for SUPT5H is not avaliable on ENCORE database.

47 proteins are bound to SUPT5H RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	39944054	39944161	+	CDS	5.38371	35.08355	K562	UCHL5
chr19	39960882	39960909	+	CDS	4.31278	33.11007	K562	YBX3
chr19	39944060	39944161	+	CDS	4.92863	31.55015	K562	ZNF622
chr19	39960909	39960915	+	CDS,intron-Proximal	4.17737	30.15516	K562	YBX3
chr19	39949463	39949519	+	CDS	3.22763	30.11428	K562	PUM1
chr19	39962014	39962144	+	CDS,intron-Proximal	4.32488	25.84028	K562	DDX24
chr19	39961020	39961037	+	CDS	4.23354	25.28181	K562	YBX3
chr19	39966649	39966753	+	CDS,intron-Proximal	4.78211	24.22502	K562	SF3B4
chr19	39949463	39949521	+	CDS	4.43122	24.11181	K562	UCHL5
chr19	39961016	39961020	+	CDS,intron-Proximal	4.16667	24.07798	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 327 entries

eCLIP assay for SUPT5H is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SUPT5H is not available on ENCORE database.
103 RBPs can affect the levels of SUPT5H.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SUPT5H is not available on ENCORE database.

103 RBPs can affect the gene expression of SUPT5H :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SUPT5H	ENSG00000196235.9	3691.27670	1995.96400	0.88690	36.51060	34.73800	HepG2	PCBP1
SUPT5H	ENSG00000196235.9	9509.96120	4518.81540	1.07340	28.52800	26.76510	K562	PUS1
SUPT5H	ENSG00000196235.9	2733.19730	1506.46080	0.85930	21.04190	19.90080	HepG2	TIAL1
SUPT5H	ENSG00000196235.9	3315.39600	2207.07540	0.58690	17.49410	16.51980	HepG2	SRSF1
SUPT5H	ENSG00000196235.9	2701.86330	1795.62930	0.58940	16.91430	15.75570	HepG2	SRSF9
SUPT5H	ENSG00000196235.9	4830.79540	3591.89980	0.42740	16.88440	15.25020	K562	NSUN2
SUPT5H	ENSG00000196235.9	5039.55240	3627.94680	0.47400	13.87740	12.98420	HepG2	SRFBP1
SUPT5H	ENSG00000196235.9	2986.77240	2031.05680	0.55630	13.74770	12.71050	HepG2	PTBP1
SUPT5H	ENSG00000196235.9	3406.63980	2421.43530	0.49240	13.52250	12.33790	HepG2	PUS1
SUPT5H	ENSG00000196235.9	3428.01930	1882.83730	0.86440	13.44970	12.21020	HepG2	EIF2S1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 122 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SUPT5H is not available on ENCORE database.

18 RBPs can affect the splicing of SUPT5H :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SUPT5H	ENSG00000196235.9	chr19	+	39948933	39948945	39948340	39948380	39949457	39949527	-0.17000	0.00002	excluded	K562	SF3B4
SE	SUPT5H	ENSG00000196235.9	chr19	+	39948933	39948945	39948340	39948380	39949457	39949527	-0.16300	0.00000	excluded	HepG2	SRSF1
SE	SUPT5H	ENSG00000196235.9	chr19	+	39948933	39948945	39948340	39948380	39949457	39949527	-0.26800	0.00000	excluded	HepG2	PCBP1
SE	SUPT5H	ENSG00000196235.9	chr19	+	39948933	39948945	39948340	39948380	39949457	39949527	-0.36400	0.00000	excluded	HepG2	SF3B4
SE	SUPT5H	ENSG00000196235.9	chr19	+	39948933	39948945	39948340	39948380	39949457	39949527	-0.25800	0.00000	excluded	K562	TARDBP
SE	SUPT5H	ENSG00000196235.9	chr19	+	39948933	39948945	39948340	39948380	39949457	39949527	-0.22000	0.00000	excluded	HepG2	SMNDC1
SE	SUPT5H	ENSG00000196235.9	chr19	+	39948933	39948945	39948314	39948380	39949457	39949527	-0.27600	0.00000	excluded	HepG2	HNRNPC
A3SS	SUPT5H	ENSG00000196235.9	chr19	+	39936417	39936605	39936443	39936605	39936080	39936277	0.08100	0.00000	longer	K562	AQR
A3SS	SUPT5H	ENSG00000196235.9	chr19	+	39964586	39964761	39964602	39964761	39964055	39964161	0.15200	0.00000	longer	K562	AQR
A5SS	SUPT5H	ENSG00000196235.9	chr19	+	39959945	39960144	39959945	39960038	39960758	39960914	0.06400	0.00000	longer	K562	AQR

Showing 1 to 10 of 23 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SUPT5H

General Information

Functions

Localization

Domains (AlphaFold: SUPT5H)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SUPT5H is not avaliable on ENCORE database.

47 proteins are bound to SUPT5H RNA:

eCLIP assay for SUPT5H is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SUPT5H is not available on ENCORE database.

103 RBPs can affect the gene expression of SUPT5H :

The Knockdown/knockout RNA-Seq assay for SUPT5H is not available on ENCORE database.

18 RBPs can affect the splicing of SUPT5H :

The Knockdown/knockout RNA-Seq assay for SUPT5H is not avaliable on ENCORE database.