SSBP3

General Information

Gene Name : SSBP3
Gene ID : ENSG00000157216.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SSBP3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SSBP3	ENSG00000157216.15	24.50	27.42	25.96	ENCSR000AEF
HepG2	SSBP3	ENSG00000157216.15	29.37	21.42	25.40	ENCSR985KAT
K562	SSBP3	ENSG00000157216.15	77.31	72.69	75.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SSBP3 is not avaliable on ENCORE database.

Proteins bound to RNA

SSBP3 RNA is bound by 50 proteins.

CanvasJS.com

eCLIP assay for SSBP3 is not avaliable on ENCORE database.

50 proteins are bound to SSBP3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	54691285	54691369	-	intron-Distal	4.90226	65.79423	K562	PUM2
chr1	54692240	54692348	-	3'-UTR,intron-Distal,intron-Proximal	5.11838	59.25676	K562	PABPC4
chr1	54866993	54867070	-	intron-Distal	5.49493	41.37668	K562	EXOSC5
chr1	54692356	54692475	-	3'-UTR,intron-Distal	5.82682	26.48908	K562	FAM120A
chr1	54868759	54868847	-	intron-Distal	5.19008	25.47315	K562	EXOSC5
chr1	54841573	54841706	-	intron-Distal	6.61257	24.63758	HepG2	PCBP2
chr1	54866174	54866247	-	intron-Distal	4.45018	24.38946	K562	EXOSC5
chr1	54871926	54872027	-	5'-UTR,intron-Distal,intron-Proximal	4.02270	24.19435	K562	GEMIN5
chr1	54730921	54731065	-	intron-Distal	5.21773	23.73795	HepG2	HNRNPL
chr1	54868125	54868195	-	intron-Distal	4.87588	23.73006	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 347 entries

eCLIP assay for SSBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SSBP3 is not available on ENCORE database.
71 RBPs can affect the levels of SSBP3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SSBP3 is not available on ENCORE database.

71 RBPs can affect the gene expression of SSBP3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SSBP3	ENSG00000157216.11	365.68400	785.32910	-1.10270	24.16100	22.53300	HepG2	ZC3H8
SSBP3	ENSG00000157216.11	483.55130	828.72810	-0.77720	13.04830	12.17510	HepG2	SRFBP1
SSBP3	ENSG00000157216.11	1611.65540	978.34860	0.72000	13.57290	11.77540	K562	EIF3G
SSBP3	ENSG00000157216.11	3832.04140	2780.66280	0.46260	11.26500	10.21430	K562	AGGF1
SSBP3	ENSG00000157216.11	4044.64310	2795.86090	0.53260	11.14660	9.97710	K562	RBM15
SSBP3	ENSG00000157216.11	421.75810	761.90000	-0.85320	10.69590	9.43010	HepG2	RBM25
SSBP3	ENSG00000157216.11	4367.48570	3308.05090	0.40070	10.19930	8.69290	K562	WDR43
SSBP3	ENSG00000157216.11	853.75590	529.32230	0.68960	9.94070	8.67070	HepG2	DNAJC21
SSBP3	ENSG00000157216.11	456.07150	757.18930	-0.73140	9.55140	8.61150	HepG2	TAF15
SSBP3	ENSG00000157216.11	471.81490	821.52560	-0.80010	9.16410	8.15330	HepG2	BOP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 77 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SSBP3 is not available on ENCORE database.

25 RBPs can affect the splicing of SSBP3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SSBP3	ENSG00000157216.11	chr1	-	54723741	54723822			54722799	54722859	54747110	54747200	0.21700	0.00000	0.00000	included	K562	FXR1
SE	SSBP3	ENSG00000157216.11	chr1	-	54722799	54722859			54717466	54717533	54747110	54747200	-0.12500	0.00000	0.00000	excluded	K562	PUS1
SE	SSBP3	ENSG00000157216.11	chr1	-	54722799	54722859			54717466	54717533	54747110	54747200	-0.06900	0.00000	0.00002	excluded	K562	RBM15
SE	SSBP3	ENSG00000157216.11	chr1	-	54723741	54723822			54722799	54722859	54747110	54747200	0.14900	0.00000	0.00248	included	K562	SAFB
MXE	SSBP3	ENSG00000157216.11	chr1	-	54722799	54722859	54723741	54723822	54717466	54717533	54747110	54747200	0.08400	0.00000	0.00000	1included	K562	FXR1
MXE	SSBP3	ENSG00000157216.11	chr1	-	54722799	54722859	54723741	54723822	54717466	54717533	54747110	54747200	0.06300	0.00000	0.00006	1included	K562	SAFB
MXE	SSBP3	ENSG00000157216.11	chr1	-	54722799	54722859	54723741	54723822	54717466	54717533	54747110	54747200	0.09900	0.00000	0.00000	1included	K562	PRPF8
MXE	SSBP3	ENSG00000157216.11	chr1	-	54722799	54722859	54723741	54723822	54717466	54717533	54747110	54747200	0.07100	0.00000	0.00016	1included	K562	SUPV3L1
SE	SSBP3	ENSG00000157216.11	chr1	-	54722799	54722859			54717466	54717533	54747110	54747200	-0.06500	0.00001	0.00034	excluded	K562	HNRNPC
SE	SSBP3	ENSG00000157216.11	chr1	-	54723741	54723822			54722799	54722859	54747110	54747200	0.29700	0.00003	0.00778	included	HepG2	HNRNPM

Showing 1 to 10 of 35 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SSBP3

General Information

Functions

Localization

Domains (AlphaFold: SSBP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SSBP3 is not avaliable on ENCORE database.

50 proteins are bound to SSBP3 RNA:

eCLIP assay for SSBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SSBP3 is not available on ENCORE database.

71 RBPs can affect the gene expression of SSBP3 :

The Knockdown/knockout RNA-Seq assay for SSBP3 is not available on ENCORE database.

25 RBPs can affect the splicing of SSBP3 :

The Knockdown/knockout RNA-Seq assay for SSBP3 is not avaliable on ENCORE database.