RAB3GAP1

General Information

Gene Name : RAB3GAP1
Gene ID : ENSG00000115839.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RAB3GAP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RAB3GAP1	ENSG00000115839.17	23.87	20.88	22.38	ENCSR000AEF
HepG2	RAB3GAP1	ENSG00000115839.17	22.17	34.76	28.46	ENCSR985KAT
K562	RAB3GAP1	ENSG00000115839.17	23.77	25.54	24.66	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RAB3GAP1 is not avaliable on ENCORE database.

Proteins bound to RNA

RAB3GAP1 RNA is bound by 42 proteins.

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eCLIP assay for RAB3GAP1 is not avaliable on ENCORE database.

42 proteins are bound to RAB3GAP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	135894267	135894279	+	intron-Distal	5.04659	400.00000	HepG2	DKC1
chr2	135894234	135894245	+	intron-Distal	5.17859	400.00000	HepG2	DKC1
chr2	135894214	135894222	+	intron-Distal	4.53725	400.00000	HepG2	DKC1
chr2	135894246	135894267	+	intron-Distal	5.18611	400.00000	HepG2	DKC1
chr2	135894225	135894229	+	intron-Distal	4.88448	400.00000	HepG2	DKC1
chr2	135894195	135894214	+	intron-Distal	3.97369	42.96222	HepG2	DKC1
chr2	135815655	135815689	+	3'-UTR,5'-UTR,CDS,intron-Proximal	6.48560	29.88239	K562	AQR
chr2	135815689	135815702	+	3'-UTR,intron-Proximal	5.50413	26.58915	K562	AQR
chr2	135926601	135926651	+	3'-UTR,intron-Distal	4.51931	23.08646	K562	PUM2
chr2	135926587	135926601	+	3'-UTR,intron-Distal	4.84383	15.16442	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 147 entries

eCLIP assay for RAB3GAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RAB3GAP1 is not available on ENCORE database.
71 RBPs can affect the levels of RAB3GAP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RAB3GAP1 is not available on ENCORE database.

71 RBPs can affect the gene expression of RAB3GAP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RAB3GAP1	ENSG00000115839.13	1035.77240	1668.82280	-0.68810	16.61780	15.39050	HepG2	TRIM56
RAB3GAP1	ENSG00000115839.13	1792.28940	2753.33510	-0.61940	15.72770	14.63670	HepG2	NELFE
RAB3GAP1	ENSG00000115839.13	1415.70730	2184.93090	-0.62610	15.90700	14.34990	K562	UPF1
RAB3GAP1	ENSG00000115839.13	1503.87640	2805.23820	-0.89940	15.81380	13.84890	K562	TARDBP
RAB3GAP1	ENSG00000115839.13	990.52820	1515.90950	-0.61390	13.79140	12.51580	HepG2	SAFB2
RAB3GAP1	ENSG00000115839.13	1008.90500	1512.45200	-0.58410	13.60250	12.26790	HepG2	DNAJC2
RAB3GAP1	ENSG00000115839.13	1396.59470	2248.82790	-0.68730	12.65600	11.08060	HepG2	NOL12
RAB3GAP1	ENSG00000115839.13	1496.85730	2109.10250	-0.49470	8.99370	7.95840	HepG2	CELF1
RAB3GAP1	ENSG00000115839.13	1942.58980	2904.31550	-0.58020	9.44740	7.64190	K562	MATR3
RAB3GAP1	ENSG00000115839.13	1057.77140	1518.25350	-0.52140	8.14210	6.92610	HepG2	PPIL4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RAB3GAP1 is not available on ENCORE database.

3 RBPs can affect the splicing of RAB3GAP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RAB3GAP1	ENSG00000115839.13	chr2	+	135926096	135926319			135926114	135926319	135922055	135922266	0.08100	0.00000	0.00000	longer	K562	AQR
MXE	RAB3GAP1	ENSG00000115839.13	chr2	+	135815558	135815656	135848567	135848700	135809999	135810055	135851184	135851263	0.07700	0.00005	0.00064	1included	K562	AQR
SE	RAB3GAP1	ENSG00000115839.13	chr2	+	135815580	135815656			135809999	135810055	135851184	135851255	-0.06700	0.00014	0.00229	excluded	K562	AQR
A5SS	RAB3GAP1	ENSG00000115839.13	chr2	+	135920124	135920221			135920124	135920208	135920317	135920421	-0.07600	0.00015	0.00359	shorter	K562	AQR
SE	RAB3GAP1	ENSG00000115839.13	chr2	+	135927303	135927418			135926114	135926319	135932896	135933158	0.78900	0.00027	0.01055	included	HepG2	SF3A3
MXE	RAB3GAP1	ENSG00000115839.13	chr2	+	135815558	135815656	135851184	135851263	135809999	135810055	135870720	135870840	0.06900	0.00052	0.00516	1included	K562	AQR
SE	RAB3GAP1	ENSG00000115839.13	chr2	+	135920317	135920421			135911218	135911446	135920555	135920671	-0.06700	0.00073	0.00941	excluded	K562	AQR
A3SS	RAB3GAP1	ENSG00000115839.13	chr2	+	135870703	135870840			135870720	135870840	135851184	135851263	0.07600	0.00083	0.00589	longer	K562	AQR
MXE	RAB3GAP1	ENSG00000115839.13	chr2	+	135815515	135815656	135848567	135848700	135809999	135810055	135851184	135851263	0.05200	0.00272	0.02153	1included	K562	AQR
SE	RAB3GAP1	ENSG00000115839.13	chr2	+	135848567	135848700			135815580	135815656	135851184	135851263	-0.05600	0.00337	0.09326	excluded	K562	TARDBP

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RAB3GAP1

General Information

Functions

Localization

Domains (AlphaFold: RAB3GAP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RAB3GAP1 is not avaliable on ENCORE database.

42 proteins are bound to RAB3GAP1 RNA:

eCLIP assay for RAB3GAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RAB3GAP1 is not available on ENCORE database.

71 RBPs can affect the gene expression of RAB3GAP1 :

The Knockdown/knockout RNA-Seq assay for RAB3GAP1 is not available on ENCORE database.

3 RBPs can affect the splicing of RAB3GAP1 :

The Knockdown/knockout RNA-Seq assay for RAB3GAP1 is not avaliable on ENCORE database.