PPP1CB

General Information

Gene Name : PPP1CB
Gene ID : ENSG00000213639.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PPP1CB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PPP1CB	ENSG00000213639.9	55.59	43.83	49.71	ENCSR000AEF
HepG2	PPP1CB	ENSG00000213639.9	46.03	65.38	55.70	ENCSR985KAT
K562	PPP1CB	ENSG00000213639.9	29.97	32.98	31.47	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PPP1CB is not avaliable on ENCORE database.

Proteins bound to RNA

PPP1CB RNA is bound by 47 proteins.

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eCLIP assay for PPP1CB is not avaliable on ENCORE database.

47 proteins are bound to PPP1CB RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	28974837	28974950	+	5'-UTR,intron-Distal,intron-Proximal	5.54888	81.81432	K562	GTF2F1
chr2	28974830	28974955	+	5'-UTR,intron-Distal,intron-Proximal	3.94596	65.97412	K562	GEMIN5
chr2	28974896	28974986	+	5'-UTR,intron-Distal,intron-Proximal	4.97908	65.86755	K562	FTO
chr2	28974833	28974907	+	5'-UTR,intron-Distal,intron-Proximal	5.09727	65.33743	HepG2	PRPF4
chr2	28974836	28974896	+	5'-UTR,intron-Distal,intron-Proximal	4.67890	52.72948	K562	FTO
chr2	28974795	28974863	+	5'-UTR,intron-Distal,intron-Proximal	4.61380	43.45403	HepG2	DDX3X
chr2	28974863	28974911	+	5'-UTR,intron-Distal,intron-Proximal	4.19881	40.02694	HepG2	DDX3X
chr2	28974895	28974948	+	5'-UTR,intron-Distal,intron-Proximal	4.50641	37.95191	K562	DDX3X
chr2	29023131	29023146	+	3'-UTR,intron-Distal	5.57764	37.69214	K562	TIA1
chr2	28974829	28974898	+	5'-UTR,intron-Distal,intron-Proximal	3.94710	36.17956	K562	DDX6
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 157 entries

eCLIP assay for PPP1CB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PPP1CB is not available on ENCORE database.
89 RBPs can affect the levels of PPP1CB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PPP1CB is not available on ENCORE database.

89 RBPs can affect the gene expression of PPP1CB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PPP1CB	ENSG00000213639.5	1021.33150	3673.05730	-1.84650	93.34660	91.23830	HepG2	TIAL1
PPP1CB	ENSG00000213639.5	2166.25230	5128.87680	-1.24340	50.69040	48.15110	HepG2	PUM2
PPP1CB	ENSG00000213639.5	1929.43950	3779.96410	-0.97020	44.55230	42.36840	HepG2	HNRNPU
PPP1CB	ENSG00000213639.5	1522.73180	3279.20700	-1.10670	43.12060	40.44610	K562	SF3A3
PPP1CB	ENSG00000213639.5	842.83690	1948.38300	-1.20900	22.24970	19.43970	K562	TIAL1
PPP1CB	ENSG00000213639.5	2267.12160	3366.24340	-0.57030	18.28550	16.84000	HepG2	SAFB2
PPP1CB	ENSG00000213639.5	3322.96690	4934.94560	-0.57060	17.50530	16.18880	HepG2	PCBP1
PPP1CB	ENSG00000213639.5	2766.92000	3861.11350	-0.48070	16.50110	14.88660	HepG2	ILF2
PPP1CB	ENSG00000213639.5	2988.58540	5668.65450	-0.92350	15.95080	14.43850	HepG2	MAGOH
PPP1CB	ENSG00000213639.5	1285.75790	2259.29420	-0.81330	15.68240	14.34570	K562	HNRNPC
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 110 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PPP1CB is not available on ENCORE database.

5 RBPs can affect the splicing of PPP1CB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PPP1CB	ENSG00000213639.5	chr2	+	29001216	29001455			28999716	28999848	29001674	29001797	0.06000	0.00000	0.00000	included	K562	AQR
A3SS	PPP1CB	ENSG00000213639.5	chr2	+	29006745	29006844			29006772	29006844	29004603	29004708	0.06900	0.00000	0.00000	longer	K562	AQR
MXE	PPP1CB	ENSG00000213639.5	chr2	+	29011523	29011675	29016728	29016863	29006772	29006844	29022064	29024514	-0.16100	0.00000	0.00000	2included	K562	DROSHA
MXE	PPP1CB	ENSG00000213639.5	chr2	+	28999716	28999848	29001674	29001905	28974718	28975042	29004603	29004708	0.12800	0.00027	0.01308	1included	HepG2	SUPV3L1
SE	PPP1CB	ENSG00000213639.5	chr2	+	29016728	29016863			29006772	29006844	29022064	29025806	0.08600	0.00033	0.00557	included	HepG2	U2AF2
MXE	PPP1CB	ENSG00000213639.5	chr2	+	29011523	29011675	29016728	29016863	29006772	29006844	29022064	29024514	-0.10400	0.00741	0.08185	2included	HepG2	HNRNPUL1
MXE	PPP1CB	ENSG00000213639.5	chr2	+	29011523	29011675	29016728	29016863	29006772	29006844	29022064	29024514	-0.07400	0.00951	0.09351	2included	K562	HNRNPUL1
MXE	PPP1CB	ENSG00000213639.5	chr2	+	29011523	29011675	29016728	29016863	29006772	29006844	29022064	29024514	-0.08500	0.01522	0.08855	2included	K562	AQR

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PPP1CB

General Information

Functions

Localization

Domains (AlphaFold: PPP1CB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PPP1CB is not avaliable on ENCORE database.

47 proteins are bound to PPP1CB RNA:

eCLIP assay for PPP1CB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PPP1CB is not available on ENCORE database.

89 RBPs can affect the gene expression of PPP1CB :

The Knockdown/knockout RNA-Seq assay for PPP1CB is not available on ENCORE database.

5 RBPs can affect the splicing of PPP1CB :

The Knockdown/knockout RNA-Seq assay for PPP1CB is not avaliable on ENCORE database.