MMD

General Information

Gene Name : MMD
Gene ID : ENSG00000108960.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MMD)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MMD	ENSG00000108960.8	18.46	15.02	16.74	ENCSR000AEF
HepG2	MMD	ENSG00000108960.8	68.17	105.75	86.96	ENCSR985KAT
K562	MMD	ENSG00000108960.8	6.94	7.44	7.19	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MMD is not avaliable on ENCORE database.

Proteins bound to RNA

MMD RNA is bound by 30 proteins.

CanvasJS.com

eCLIP assay for MMD is not avaliable on ENCORE database.

30 proteins are bound to MMD RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	53470426	53470453	-	3'-UTR,intron-Distal	6.03671	400.00000	HepG2	FUBP3
chr17	53470400	53470425	-	3'-UTR,intron-Distal	6.65469	400.00000	HepG2	FUBP3
chr17	53470458	53470492	-	3'-UTR,intron-Distal	5.71988	83.32014	HepG2	FUBP3
chr17	53470492	53470506	-	3'-UTR,intron-Distal	6.00042	56.32972	HepG2	FUBP3
chr17	53470350	53470400	-	3'-UTR,intron-Distal	5.09545	44.30218	HepG2	FUBP3
chr17	53484957	53485064	-	intron-Distal,intron-Proximal	5.06774	43.97326	HepG2	PCBP2
chr17	53470250	53470276	-	3'-UTR,intron-Distal	5.44428	40.50674	HepG2	FUBP3
chr17	53470196	53470250	-	3'-UTR,intron-Distal	5.27393	37.70034	HepG2	FUBP3
chr17	53470276	53470308	-	3'-UTR,intron-Distal	5.03749	30.06658	HepG2	FUBP3
chr17	53470032	53470086	-	3'-UTR,intron-Distal	5.30676	29.21067	HepG2	FUBP3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 87 entries

eCLIP assay for MMD is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MMD is not available on ENCORE database.
128 RBPs can affect the levels of MMD.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MMD is not available on ENCORE database.

128 RBPs can affect the gene expression of MMD :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MMD	ENSG00000108960.3	1195.43600	6134.33740	-2.35940	254.29220	251.75920	HepG2	SSB
MMD	ENSG00000108960.3	1371.20980	5676.94890	-2.04970	124.94940	122.55840	HepG2	TIAL1
MMD	ENSG00000108960.3	1916.79920	5190.23240	-1.43710	104.64280	101.22980	HepG2	DNAJC2
MMD	ENSG00000108960.3	1444.74450	4142.90700	-1.51980	97.05560	94.68020	HepG2	DKC1
MMD	ENSG00000108960.3	2409.44980	6959.62110	-1.53030	96.38960	94.00060	HepG2	PUM1
MMD	ENSG00000108960.3	1553.20100	5287.04110	-1.76720	74.52590	72.17960	HepG2	HNRNPA1
MMD	ENSG00000108960.3	3678.49540	7993.04710	-1.11960	69.50330	67.69100	HepG2	NELFE
MMD	ENSG00000108960.3	1639.18600	3482.72530	-1.08720	62.64360	60.34660	HepG2	ZC3H8
MMD	ENSG00000108960.3	2156.60710	4329.45100	-1.00540	62.00980	59.84730	HepG2	CKAP4
MMD	ENSG00000108960.3	3932.79860	7804.98980	-0.98880	60.24140	58.68220	HepG2	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 140 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MMD is not available on ENCORE database.

12 RBPs can affect the splicing of MMD :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	MMD	ENSG00000108960.3	chr17	-	53485078	53485181			53481127	53481229	53488617	53488778	0.08800	0.00055	included	HepG2	G3BP1
SE	MMD	ENSG00000108960.3	chr17	-	53485106	53485181			53481127	53481229	53488617	53488778	-0.12600	0.00000	excluded	HepG2	U2AF1
SE	MMD	ENSG00000108960.3	chr17	-	53485106	53485181			53481127	53481229	53488617	53488778	-0.09700	0.00000	excluded	HepG2	U2AF2
SE	MMD	ENSG00000108960.3	chr17	-	53485078	53485181			53481127	53481229	53488617	53488778	0.06600	0.00198	included	HepG2	SUGP2
SE	MMD	ENSG00000108960.3	chr17	-	53485106	53485181			53481127	53481229	53488617	53488778	0.06300	0.00012	included	HepG2	PTBP1
SE	MMD	ENSG00000108960.3	chr17	-	53485106	53485181			53481127	53481229	53488617	53488778	0.06600	0.00012	included	HepG2	SRSF1
MXE	MMD	ENSG00000108960.3	chr17	-	53481127	53481229	53485106	53485181	53469973	53471895	53488617	53488778	-0.19100	0.00000	2included	HepG2	U2AF1
MXE	MMD	ENSG00000108960.3	chr17	-	53481127	53481229	53485106	53485181	53469973	53471895	53488617	53488778	0.07700	0.00008	1included	HepG2	SUGP2
MXE	MMD	ENSG00000108960.3	chr17	-	53481127	53481229	53485106	53485181	53469973	53471895	53488617	53488778	-0.18800	0.00000	2included	HepG2	U2AF2
MXE	MMD	ENSG00000108960.3	chr17	-	53488617	53488778	53491511	53491593	53481127	53481229	53499030	53499285	0.07200	0.00012	1included	HepG2	G3BP1

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MMD

General Information

Functions

Localization

Domains (AlphaFold: MMD)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MMD is not avaliable on ENCORE database.

30 proteins are bound to MMD RNA:

eCLIP assay for MMD is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MMD is not available on ENCORE database.

128 RBPs can affect the gene expression of MMD :

The Knockdown/knockout RNA-Seq assay for MMD is not available on ENCORE database.

12 RBPs can affect the splicing of MMD :

The Knockdown/knockout RNA-Seq assay for MMD is not avaliable on ENCORE database.