HGD

General Information

Gene Name : HGD
Gene ID : ENSG00000113924.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HGD)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HGD	ENSG00000113924.11	0.00	0.19	0.10	ENCSR000AEF
HepG2	HGD	ENSG00000113924.11	119.34	145.65	132.50	ENCSR985KAT
K562	HGD	ENSG00000113924.11	0.02	0.06	0.04	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HGD is not avaliable on ENCORE database.

Proteins bound to RNA

HGD RNA is bound by 33 proteins.

CanvasJS.com

eCLIP assay for HGD is not avaliable on ENCORE database.

33 proteins are bound to HGD RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	120366557	120366643	-	intron-Distal,intron-Proximal	6.60251	57.33037	HepG2	U2AF2
chr3	120365143	120365204	-	CDS,intron-Distal,intron-Proximal	4.27249	56.15451	HepG2	PPIG
chr3	120365830	120365883	-	CDS,intron-Distal	3.19792	49.85959	HepG2	BCLAF1
chr3	120360521	120360554	-	CDS,intron-Distal,intron-Proximal	4.31241	47.83324	HepG2	U2AF2
chr3	120360481	120360521	-	CDS,intron-Distal	3.84063	45.26481	HepG2	U2AF2
chr3	120365819	120365865	-	CDS,intron-Distal,intron-Proximal	4.16420	44.60611	HepG2	PPIG
chr3	120358922	120359032	-	intron-Distal	4.05560	42.05730	HepG2	PTBP1
chr3	120389289	120389355	-	CDS,intron-Distal	3.36174	41.28462	HepG2	BCLAF1
chr3	120394638	120394697	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.11252	40.75276	HepG2	BCLAF1
chr3	120371438	120371487	-	CDS,intron-Distal,intron-Proximal	3.35759	37.91646	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 137 entries

eCLIP assay for HGD is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HGD is not available on ENCORE database.
89 RBPs can affect the levels of HGD.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for HGD is not available on ENCORE database.

89 RBPs can affect the gene expression of HGD :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HGD	ENSG00000113924.7	1424.84800	3656.74960	-1.35980	64.96580	63.11310	HepG2	RBM22
HGD	ENSG00000113924.7	1305.32690	5121.71890	-1.97220	51.68360	49.83110	HepG2	AKAP1
HGD	ENSG00000113924.7	2266.39160	4404.52980	-0.95860	43.78900	42.16410	HepG2	PTBP1
HGD	ENSG00000113924.7	1531.19230	3379.00780	-1.14190	30.80970	29.10600	HepG2	PUF60
HGD	ENSG00000113924.7	3029.25660	1324.02470	1.19390	28.52870	26.54840	HepG2	NSUN2
HGD	ENSG00000113924.7	1405.96850	2345.72520	-0.73850	28.18050	26.48100	HepG2	SMN1
HGD	ENSG00000113924.7	1545.83330	2586.85720	-0.74280	25.60360	24.18290	HepG2	ACO1
HGD	ENSG00000113924.7	5593.43850	3585.96710	0.64130	24.43500	23.24740	HepG2	SSB
HGD	ENSG00000113924.7	1171.48300	2742.26460	-1.22700	21.83300	20.05350	HepG2	FIP1L1
HGD	ENSG00000113924.7	3837.88360	2474.90290	0.63280	19.17000	17.75570	HepG2	DKC1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 90 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HGD is not available on ENCORE database.

36 RBPs can affect the splicing of HGD :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	HGD	ENSG00000113924.7	chr3	-	120363165	120363290	120360435	120360540	120365819	120365899	-0.32800	0.00000	excluded	HepG2	U2AF1
SE	HGD	ENSG00000113924.7	chr3	-	120365113	120365213	120360435	120360540	120365819	120365891	-0.19900	0.00010	excluded	HepG2	HNRNPK
SE	HGD	ENSG00000113924.7	chr3	-	120365113	120365213	120360435	120360540	120365819	120365899	0.14400	0.00006	included	HepG2	QKI
SE	HGD	ENSG00000113924.7	chr3	-	120394638	120394710	120393747	120393836	120400943	120401116	-0.09100	0.00000	excluded	HepG2	U2AF2
SE	HGD	ENSG00000113924.7	chr3	-	120365113	120365213	120360435	120360540	120365819	120365899	-0.27100	0.00001	excluded	HepG2	U2AF2
SE	HGD	ENSG00000113924.7	chr3	-	120365113	120365213	120360435	120360540	120365819	120365891	-0.18100	0.00032	excluded	HepG2	NCBP2
SE	HGD	ENSG00000113924.7	chr3	-	120396750	120396838	120394638	120394710	120400943	120400978	0.25800	0.00000	included	HepG2	HNRNPL
SE	HGD	ENSG00000113924.7	chr3	-	120363165	120363290	120360435	120360540	120365819	120365899	-0.32100	0.00000	excluded	HepG2	SF3A3
SE	HGD	ENSG00000113924.7	chr3	-	120357301	120357428	120351993	120352175	120360435	120360540	-0.11300	0.00001	excluded	HepG2	TIAL1
SE	HGD	ENSG00000113924.7	chr3	-	120363165	120363290	120360435	120360540	120365819	120365899	-0.16200	0.00054	excluded	HepG2	SF3B4

Showing 1 to 10 of 70 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HGD

General Information

Functions

Localization

Domains (AlphaFold: HGD)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HGD is not avaliable on ENCORE database.

33 proteins are bound to HGD RNA:

eCLIP assay for HGD is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HGD is not available on ENCORE database.

89 RBPs can affect the gene expression of HGD :

The Knockdown/knockout RNA-Seq assay for HGD is not available on ENCORE database.

36 RBPs can affect the splicing of HGD :

The Knockdown/knockout RNA-Seq assay for HGD is not avaliable on ENCORE database.