HERPUD1

General Information

Gene Name : HERPUD1
Gene ID : ENSG00000051108.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HERPUD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HERPUD1	ENSG00000051108.14	93.93	93.88	93.91	ENCSR000AEF
HepG2	HERPUD1	ENSG00000051108.14	100.42	93.77	97.09	ENCSR985KAT
K562	HERPUD1	ENSG00000051108.14	43.87	38.90	41.38	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HERPUD1 is not avaliable on ENCORE database.

Proteins bound to RNA

HERPUD1 RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for HERPUD1 is not avaliable on ENCORE database.

25 proteins are bound to HERPUD1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	56966080	56966136	+	5'-UTR	4.43214	46.72769	HepG2	DDX3X
chr16	56976136	56976192	+	CDS,intron-Distal,intron-Proximal	4.60210	44.68346	HepG2	PRPF8
chr16	56969089	56969171	+	5'-UTR,CDS,intron-Proximal	4.02821	30.03672	HepG2	BUD13
chr16	56966220	56966249	+	CDS	4.48699	24.92522	HepG2	DDX3X
chr16	56966136	56966166	+	5'-UTR,CDS	3.68277	23.76563	HepG2	DDX3X
chr16	56966249	56966274	+	CDS	5.68520	20.99214	HepG2	DDX3X
chr16	56966309	56966347	+	intron-Proximal	4.43976	18.77477	K562	AQR
chr16	56966302	56966309	+	CDS,intron-Proximal	4.94911	17.02742	K562	AQR
chr16	56977505	56977584	+	3'-UTR	5.33827	16.47398	HepG2	RBFOX2
chr16	56977482	56977584	+	3'-UTR	4.10609	16.19714	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 96 entries

eCLIP assay for HERPUD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HERPUD1 is not available on ENCORE database.
138 RBPs can affect the levels of HERPUD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for HERPUD1 is not available on ENCORE database.

138 RBPs can affect the gene expression of HERPUD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HERPUD1	ENSG00000051108.10	506.07660	1579.73310	-1.64230	62.46420	59.86450	K562	FXR1
HERPUD1	ENSG00000051108.10	4737.32660	2023.17950	1.22730	47.87250	45.39500	HepG2	PUM2
HERPUD1	ENSG00000051108.10	5114.60120	2686.98520	0.92850	42.01850	40.19570	HepG2	ETF1
HERPUD1	ENSG00000051108.10	700.68270	1780.62680	-1.34560	38.42580	36.06020	K562	PTBP1
HERPUD1	ENSG00000051108.10	1136.10450	2141.66530	-0.91460	33.34200	31.59450	HepG2	SUCLG1
HERPUD1	ENSG00000051108.10	2838.62770	1165.87590	1.28370	32.46160	30.36250	HepG2	SF3B1
HERPUD1	ENSG00000051108.10	391.69820	976.34380	-1.31760	31.00930	28.37110	K562	EIF3G
HERPUD1	ENSG00000051108.10	3167.85310	1234.29570	1.35970	28.01760	26.22740	HepG2	GPKOW
HERPUD1	ENSG00000051108.10	2189.90650	939.49740	1.22080	26.88920	24.67880	K562	HSPD1
HERPUD1	ENSG00000051108.10	3535.77290	2202.37470	0.68290	23.64050	22.46760	HepG2	SSB
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 167 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HERPUD1 is not available on ENCORE database.

10 RBPs can affect the splicing of HERPUD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	HERPUD1	ENSG00000051108.10	chr16	+	56969312	56969387			56969146	56969224	56970598	56970729	-0.13100	0.00000	0.00000	excluded	HepG2	SF3B4
A3SS	HERPUD1	ENSG00000051108.10	chr16	+	56973779	56973858			56973806	56973858	56973148	56973271	0.18800	0.00000	0.00000	longer	K562	AQR
MXE	HERPUD1	ENSG00000051108.10	chr16	+	56973806	56974157	56976043	56976149	56973148	56973271	56977037	56977793	0.09400	0.00000	0.00000	1included	K562	DROSHA
MXE	HERPUD1	ENSG00000051108.10	chr16	+	56973806	56974157	56976043	56976149	56973148	56973271	56977037	56977793	0.19300	0.00000	0.00000	1included	K562	PUS1
MXE	HERPUD1	ENSG00000051108.10	chr16	+	56973806	56974157	56976043	56976149	56973148	56973271	56977037	56977793	0.13100	0.00000	0.00000	1included	K562	HNRNPUL1
SE	HERPUD1	ENSG00000051108.10	chr16	+	56969312	56969387			56969146	56969224	56970598	56970729	-0.08900	0.00004	0.00084	excluded	K562	AQR
SE	HERPUD1	ENSG00000051108.10	chr16	+	56969312	56969387			56969146	56969224	56970598	56970729	-0.09600	0.00006	0.00301	excluded	HepG2	SF3A3
SE	HERPUD1	ENSG00000051108.10	chr16	+	56969312	56969387			56969146	56969224	56970598	56970729	-0.06200	0.00016	0.00454	excluded	K562	SF3B4
MXE	HERPUD1	ENSG00000051108.10	chr16	+	56973806	56974157	56976043	56976149	56973148	56973271	56977037	56977793	0.08800	0.00168	0.07406	1included	K562	UTP18
SE	HERPUD1	ENSG00000051108.10	chr16	+	56969312	56969387			56969146	56969224	56970598	56970729	-0.15700	0.00267	0.07672	excluded	K562	PRPF8

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HERPUD1

General Information

Functions

Localization

Domains (AlphaFold: HERPUD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HERPUD1 is not avaliable on ENCORE database.

25 proteins are bound to HERPUD1 RNA:

eCLIP assay for HERPUD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HERPUD1 is not available on ENCORE database.

138 RBPs can affect the gene expression of HERPUD1 :

The Knockdown/knockout RNA-Seq assay for HERPUD1 is not available on ENCORE database.

10 RBPs can affect the splicing of HERPUD1 :

The Knockdown/knockout RNA-Seq assay for HERPUD1 is not avaliable on ENCORE database.