HDAC3

General Information

Gene Name : HDAC3
Gene ID : ENSG00000171720.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HDAC3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HDAC3	ENSG00000171720.9	85.24	78.34	81.79	ENCSR000AEF
HepG2	HDAC3	ENSG00000171720.9	56.27	63.41	59.84	ENCSR985KAT
K562	HDAC3	ENSG00000171720.9	103.90	102.68	103.29	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HDAC3 is not avaliable on ENCORE database.

Proteins bound to RNA

HDAC3 RNA is bound by 16 proteins.

CanvasJS.com

eCLIP assay for HDAC3 is not avaliable on ENCORE database.

16 proteins are bound to HDAC3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	141016070	141016111	-	intron-Distal,intron-Proximal	6.35992	70.06871	K562	AQR
chr5	141016111	141016115	-	intron-Distal,intron-Proximal	5.92193	49.70055	K562	AQR
chr5	141015946	141016043	-	intron-Distal,intron-Proximal	4.20586	37.18394	K562	AQR
chr5	141014509	141014521	-	CDS,intron-Distal,intron-Proximal	4.29306	27.99285	K562	AQR
chr5	141014521	141014544	-	intron-Distal,intron-Proximal	4.74665	27.90532	K562	AQR
chr5	141016043	141016070	-	intron-Distal,intron-Proximal	4.30143	25.90689	K562	AQR
chr5	141009304	141009396	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.98404	18.21956	HepG2	EFTUD2
chr5	141014544	141014557	-	intron-Distal,intron-Proximal	5.08504	18.07708	K562	AQR
chr5	141009290	141009378	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.15623	17.22918	K562	EFTUD2
chr5	141016032	141016126	-	CDS,intron-Distal,intron-Proximal	3.53410	14.90805	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 69 entries

eCLIP assay for HDAC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HDAC3 is not available on ENCORE database.
111 RBPs can affect the levels of HDAC3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for HDAC3 is not available on ENCORE database.

111 RBPs can affect the gene expression of HDAC3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HDAC3	ENSG00000171720.5	729.53070	2089.32810	-1.51800	43.99660	41.61280	HepG2	PUM2
HDAC3	ENSG00000171720.5	1026.69900	2040.53240	-0.99090	32.92980	31.29590	HepG2	SF3B4
HDAC3	ENSG00000171720.5	4084.16410	2602.54340	0.65000	21.43160	19.96300	K562	AGGF1
HDAC3	ENSG00000171720.5	5261.04340	2685.65550	0.97000	21.39290	19.90840	K562	PUS1
HDAC3	ENSG00000171720.5	1169.17450	1959.86990	-0.74530	19.38640	18.18470	HepG2	PTBP1
HDAC3	ENSG00000171720.5	1169.32050	1926.12140	-0.72000	18.84020	17.48760	HepG2	PCBP1
HDAC3	ENSG00000171720.5	1129.68800	2109.69480	-0.90110	19.44550	16.86200	K562	RCC2
HDAC3	ENSG00000171720.5	3427.98390	5328.51000	-0.63640	18.95250	16.55810	K562	PUM2
HDAC3	ENSG00000171720.5	755.31360	1425.72880	-0.91660	16.80730	15.18030	HepG2	ILF2
HDAC3	ENSG00000171720.5	896.39730	1435.10460	-0.67890	14.48320	13.11010	HepG2	SRSF7
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 129 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HDAC3 is not available on ENCORE database.

30 RBPs can affect the splicing of HDAC3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	HDAC3	ENSG00000171720.5	chr5	-	141014377	141014520	141009426	141009692	141016114	141016197	-0.11000	0.00037	excluded	K562	PRPF8
SE	HDAC3	ENSG00000171720.5	chr5	-	141014377	141014520	141008739	141008873	141016114	141016197	-0.28500	0.00000	excluded	HepG2	U2AF1
SE	HDAC3	ENSG00000171720.5	chr5	-	141005579	141005638	141005251	141005331	141005760	141005850	-0.10900	0.00001	excluded	HepG2	U2AF1
SE	HDAC3	ENSG00000171720.5	chr5	-	141005579	141005638	141005251	141005331	141005760	141005850	-0.15300	0.00000	excluded	HepG2	U2AF2
SE	HDAC3	ENSG00000171720.5	chr5	-	141014377	141014520	141009426	141009692	141016114	141016197	-0.10900	0.00000	excluded	K562	AQR
SE	HDAC3	ENSG00000171720.5	chr5	-	141005251	141005331	141004774	141004932	141005760	141005850	-0.11200	0.00032	excluded	HepG2	SF3A3
SE	HDAC3	ENSG00000171720.5	chr5	-	141007459	141007524	141005760	141005850	141007680	141007754	-0.14500	0.00000	excluded	K562	U2AF2
SE	HDAC3	ENSG00000171720.5	chr5	-	141005579	141005638	141005251	141005331	141005760	141005850	-0.05800	0.00019	excluded	K562	U2AF2
A3SS	HDAC3	ENSG00000171720.5	chr5	-	141014377	141014607	141014377	141014520	141016114	141016197	0.09500	0.00000	longer	K562	AQR
A3SS	HDAC3	ENSG00000171720.5	chr5	-	141005251	141005450	141005251	141005331	141005579	141005679	0.06500	0.00000	longer	K562	AQR

Showing 1 to 10 of 67 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HDAC3

General Information

Functions

Localization

Domains (AlphaFold: HDAC3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HDAC3 is not avaliable on ENCORE database.

16 proteins are bound to HDAC3 RNA:

eCLIP assay for HDAC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HDAC3 is not available on ENCORE database.

111 RBPs can affect the gene expression of HDAC3 :

The Knockdown/knockout RNA-Seq assay for HDAC3 is not available on ENCORE database.

30 RBPs can affect the splicing of HDAC3 :

The Knockdown/knockout RNA-Seq assay for HDAC3 is not avaliable on ENCORE database.