GSS

General Information

Gene Name : GSS
Gene ID : ENSG00000100983.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GSS)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GSS	ENSG00000100983.10	31.45	46.93	39.19	ENCSR000AEF
HepG2	GSS	ENSG00000100983.10	78.99	62.98	70.98	ENCSR985KAT
K562	GSS	ENSG00000100983.10	73.33	72.19	72.76	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GSS is not avaliable on ENCORE database.

Proteins bound to RNA

GSS RNA is bound by 14 proteins.

CanvasJS.com

eCLIP assay for GSS is not avaliable on ENCORE database.

14 proteins are bound to GSS RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	33530365	33530457	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.00851	62.36777	K562	AQR
chr20	33530683	33530723	-	5'-UTR,intron-Distal,intron-Proximal	6.38932	34.42425	K562	AQR
chr20	33530723	33530734	-	5'-UTR,intron-Distal,intron-Proximal	6.73240	22.27579	K562	AQR
chr20	33530624	33530668	-	5'-UTR,intron-Distal,intron-Proximal	6.02228	18.99614	K562	AQR
chr20	33530460	33530505	-	5'-UTR,intron-Distal,intron-Proximal	6.48985	16.98862	K562	AQR
chr20	33530373	33530479	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.12379	15.83756	K562	PRPF8
chr20	33530617	33530674	-	5'-UTR,intron-Distal,intron-Proximal	4.24703	13.77836	K562	PRPF8
chr20	33533711	33533795	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.75678	13.14214	HepG2	PRPF8
chr20	33530291	33530351	-	CDS,intron-Distal	3.72470	12.86652	K562	YBX3
chr20	33530734	33530804	-	5'-UTR,CDS,intron-Distal	4.02482	11.79269	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 36 entries

eCLIP assay for GSS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GSS is not available on ENCORE database.
96 RBPs can affect the levels of GSS.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GSS is not available on ENCORE database.

96 RBPs can affect the gene expression of GSS :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GSS	ENSG00000100983.5	964.38810	2599.05930	-1.43030	37.48240	35.52840	K562	AQR
GSS	ENSG00000100983.5	415.75080	1105.34820	-1.41070	34.66390	31.93670	K562	U2AF2
GSS	ENSG00000100983.5	642.16090	1469.05080	-1.19390	26.23180	24.47420	K562	HNRNPC
GSS	ENSG00000100983.5	2149.88720	1273.44700	0.75540	21.98910	20.92780	HepG2	SRSF1
GSS	ENSG00000100983.5	1566.48130	889.94930	0.81560	21.45650	20.02090	HepG2	UTP3
GSS	ENSG00000100983.5	1903.56410	919.13320	1.05030	21.43720	19.78440	HepG2	DDX21
GSS	ENSG00000100983.5	1762.71660	3403.52910	-0.94920	20.03510	17.75220	K562	PUF60
GSS	ENSG00000100983.5	1619.57380	1057.44340	0.61490	14.11910	12.91610	HepG2	PUS1
GSS	ENSG00000100983.5	2737.46360	1387.17960	0.98060	13.58250	12.49620	HepG2	AKAP1
GSS	ENSG00000100983.5	634.22040	1036.04300	-0.70800	13.27780	12.22980	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 118 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GSS is not available on ENCORE database.

26 RBPs can affect the splicing of GSS :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GSS	ENSG00000100983.5	chr20	-	33529515	33529632			33524745	33524826	33530290	33530809	-0.13700	0.00000	0.00008	excluded	HepG2	U2AF2
A3SS	GSS	ENSG00000100983.5	chr20	-	33517203	33517430			33517203	33517393	33519138	33519220	0.05300	0.00000	0.00001	longer	K562	AQR
A3SS	GSS	ENSG00000100983.5	chr20	-	33519741	33519977			33519741	33519936	33523378	33523467	0.05400	0.00000	0.00001	longer	K562	AQR
RI	GSS	ENSG00000100983.5	chr20	-	33530290	33530809			33530290	33530430	33530733	33530809	-0.09800	0.00000	0.00024	excluded	K562	SRSF1
RI	GSS	ENSG00000100983.5	chr20	-	33530290	33530809			33530290	33530430	33530733	33530809	0.13300	0.00000	0.00002	included	HepG2	QKI
RI	GSS	ENSG00000100983.5	chr20	-	33530290	33530809			33530290	33530430	33530733	33530809	0.10600	0.00000	0.00004	included	HepG2	TAF15
RI	GSS	ENSG00000100983.5	chr20	-	33530290	33530809			33530290	33530430	33530733	33530809	0.11000	0.00000	0.00000	included	HepG2	TIAL1
RI	GSS	ENSG00000100983.5	chr20	-	33530290	33530809			33530290	33530430	33530733	33530809	0.15000	0.00000	0.00000	included	HepG2	HNRNPK
MXE	GSS	ENSG00000100983.5	chr20	-	33529515	33529632	33530290	33530484	33524745	33524826	33530733	33530809	0.11300	0.00000	0.00001	1included	HepG2	U2AF2
SE	GSS	ENSG00000100983.5	chr20	-	33530290	33530430			33524745	33524826	33530733	33530809	-0.07800	0.00001	0.00033	excluded	K562	AQR

Showing 1 to 10 of 34 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GSS

General Information

Functions

Localization

Domains (AlphaFold: GSS)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GSS is not avaliable on ENCORE database.

14 proteins are bound to GSS RNA:

eCLIP assay for GSS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GSS is not available on ENCORE database.

96 RBPs can affect the gene expression of GSS :

The Knockdown/knockout RNA-Seq assay for GSS is not available on ENCORE database.

26 RBPs can affect the splicing of GSS :

The Knockdown/knockout RNA-Seq assay for GSS is not avaliable on ENCORE database.