CHTF18

General Information

Gene Name : CHTF18
Gene ID : ENSG00000127586.16
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CHTF18)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHTF18	ENSG00000127586.16	0.21	1.13	0.67	ENCSR000AEF
HepG2	CHTF18	ENSG00000127586.16	28.18	2.35	15.27	ENCSR985KAT
K562	CHTF18	ENSG00000127586.16	16.62	3.46	10.04	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHTF18 is not avaliable on ENCORE database.

Proteins bound to RNA

CHTF18 RNA is bound by 33 proteins.

CanvasJS.com

eCLIP assay for CHTF18 is not avaliable on ENCORE database.

33 proteins are bound to CHTF18 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	841099	841137	+	intron-Proximal	5.96424	400.00000	K562	SF3B4
chr16	841137	841148	+	intron-Proximal	6.24222	74.36035	K562	SF3B4
chr16	841718	841795	+	intron-Distal,intron-Proximal	4.65704	45.31485	K562	DDX24
chr16	841148	841190	+	5'-UTR,CDS,intron-Proximal	5.85400	37.84191	K562	SF3B4
chr16	841103	841171	+	CDS,intron-Proximal	5.10486	35.66083	HepG2	SF3A3
chr16	842036	842118	+	intron-Distal,intron-Proximal	4.68789	35.30349	K562	DDX24
chr16	841059	841144	+	intron-Distal,intron-Proximal	5.38897	31.89042	K562	DDX24
chr16	840956	841021	+	intron-Distal	4.87299	29.59254	K562	DDX24
chr16	841715	841772	+	intron-Distal,intron-Proximal	4.10962	29.43028	K562	RBFOX2
chr16	841720	841779	+	intron-Distal,intron-Proximal	3.29202	26.15719	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 152 entries

eCLIP assay for CHTF18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHTF18 is not available on ENCORE database.
120 RBPs can affect the levels of CHTF18.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CHTF18 is not available on ENCORE database.

120 RBPs can affect the gene expression of CHTF18 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHTF18	ENSG00000127586.12	102.30530	547.30330	-2.41950	62.51330	60.80890	HepG2	ZNF622
CHTF18	ENSG00000127586.12	125.47250	743.28800	-2.56660	55.94630	54.43840	HepG2	SRFBP1
CHTF18	ENSG00000127586.12	494.65050	151.01460	1.71160	29.31190	27.68980	HepG2	RECQL
CHTF18	ENSG00000127586.12	1238.57130	540.67580	1.19570	24.99450	22.27980	K562	BCLAF1
CHTF18	ENSG00000127586.12	273.00190	603.01130	-1.14330	21.56490	20.10040	HepG2	CKAP4
CHTF18	ENSG00000127586.12	58.63380	251.82540	-2.10260	20.08740	18.59110	HepG2	RPLP0
CHTF18	ENSG00000127586.12	530.85450	237.54180	1.16000	18.86780	17.47710	HepG2	SUCLG1
CHTF18	ENSG00000127586.12	510.48740	148.96300	1.77680	18.57740	16.96370	HepG2	FXR1
CHTF18	ENSG00000127586.12	583.62300	162.11820	1.84790	16.19820	15.09660	HepG2	NELFE
CHTF18	ENSG00000127586.12	351.10620	93.52300	1.90840	15.83500	14.48400	HepG2	SAFB2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 140 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHTF18 is not available on ENCORE database.

4 RBPs can affect the splicing of CHTF18 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CHTF18	ENSG00000127586.12	chr16	+	845131	845356	844053	844201	845684	845834	0.14400	0.00002	0.00803	included	K562	EIF4G2
A3SS	CHTF18	ENSG00000127586.12	chr16	+	840006	840269	840176	840269	839546	839715	-0.45200	0.00010	0.01276	shorter	K562	SRSF1
SE	CHTF18	ENSG00000127586.12	chr16	+	840006	840081	839546	839715	840176	840269	0.33000	0.00020	0.03934	included	K562	LARP4
SE	CHTF18	ENSG00000127586.12	chr16	+	840006	840081	839546	839715	840176	840269	-0.39800	0.00047	0.01121	excluded	K562	SRSF1
A3SS	CHTF18	ENSG00000127586.12	chr16	+	842948	843064	842965	843064	842717	842811	0.10200	0.00057	0.00419	longer	K562	AQR
A3SS	CHTF18	ENSG00000127586.12	chr16	+	840139	840269	840176	840269	839546	839715	0.06200	0.00367	0.02202	longer	K562	AQR
RI	CHTF18	ENSG00000127586.12	chr16	+	838930	839360	838930	839125	839209	839360	0.22400	0.01033	0.05540	included	K562	AQR

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHTF18

General Information

Functions

Localization

Domains (AlphaFold: CHTF18)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHTF18 is not avaliable on ENCORE database.

33 proteins are bound to CHTF18 RNA:

eCLIP assay for CHTF18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHTF18 is not available on ENCORE database.

120 RBPs can affect the gene expression of CHTF18 :

The Knockdown/knockout RNA-Seq assay for CHTF18 is not available on ENCORE database.

4 RBPs can affect the splicing of CHTF18 :

The Knockdown/knockout RNA-Seq assay for CHTF18 is not avaliable on ENCORE database.