CHERP

General Information

Gene Name : CHERP
Gene ID : ENSG00000085872.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CHERP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHERP	ENSG00000085872.14	2.22	11.96	7.09	ENCSR000AEF
HepG2	CHERP	ENSG00000085872.14	32.11	11.60	21.86	ENCSR985KAT
K562	CHERP	ENSG00000085872.14	30.19	17.69	23.94	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHERP is not avaliable on ENCORE database.

Proteins bound to RNA

CHERP RNA is bound by 28 proteins.

CanvasJS.com

eCLIP assay for CHERP is not avaliable on ENCORE database.

28 proteins are bound to CHERP RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	16629146	16629272	-	3'-UTR,intron-Distal	3.22871	18.36784	K562	UPF1
chr19	16630133	16630210	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.90351	16.10260	HepG2	SF3B4
chr19	16629489	16629651	-	3'-UTR,intron-Distal,intron-Proximal	4.39890	13.41308	HepG2	UPF1
chr19	16630122	16630207	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.70071	11.17285	K562	SF3B4
chr19	16652675	16652753	-	CDS,intron-Distal,intron-Proximal	5.38155	10.28526	K562	UCHL5
chr19	16629073	16629141	-	3'-UTR,intron-Distal	4.10046	10.04737	K562	UPF1
chr19	16652800	16652855	-	CDS,intron-Distal,intron-Proximal	3.71629	9.42776	K562	ZNF622
chr19	16640631	16640712	-	CDS,intron-Distal,intron-Proximal	3.06389	9.17031	K562	ZNF622
chr19	16633815	16633897	-	CDS,intron-Distal,intron-Proximal	3.48151	8.45537	HepG2	PRPF8
chr19	16643397	16643449	-	CDS,intron-Distal,intron-Proximal	5.78298	8.32974	K562	DDX24
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 89 entries

eCLIP assay for CHERP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHERP is not available on ENCORE database.
108 RBPs can affect the levels of CHERP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CHERP is not available on ENCORE database.

108 RBPs can affect the gene expression of CHERP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHERP	ENSG00000085872.10	974.87240	419.42520	1.21670	33.42930	31.54730	HepG2	SAFB2
CHERP	ENSG00000085872.10	1531.49840	816.52650	0.90730	30.72410	29.17710	HepG2	PUM1
CHERP	ENSG00000085872.10	863.54500	418.50800	1.04490	25.68810	23.89600	HepG2	DNAJC2
CHERP	ENSG00000085872.10	1385.71520	737.55490	0.90970	24.07650	22.41080	HepG2	SLBP
CHERP	ENSG00000085872.10	1666.22260	732.07180	1.18640	23.55540	20.89630	K562	MAGOH
CHERP	ENSG00000085872.10	917.57640	461.74630	0.99060	21.67930	20.28810	HepG2	TRIM56
CHERP	ENSG00000085872.10	1472.17170	863.70100	0.76920	20.55010	19.10510	HepG2	SUCLG1
CHERP	ENSG00000085872.10	1553.98900	711.30740	1.12730	20.19700	18.47500	K562	PTBP1
CHERP	ENSG00000085872.10	405.72520	1025.28480	-1.33740	19.57240	18.27450	HepG2	TAF15
CHERP	ENSG00000085872.10	1444.75090	697.39910	1.05070	16.60910	14.88570	K562	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 125 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHERP is not available on ENCORE database.

2 RBPs can affect the splicing of CHERP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CHERP	ENSG00000085872.10	chr19	-	16630431	16630625	16630431	16630526	16630959	16631076	0.28700	0.00000	0.00000	longer	K562	AQR
A3SS	CHERP	ENSG00000085872.10	chr19	-	16632331	16632528	16632331	16632465	16633862	16634101	0.09700	0.00000	0.00001	longer	K562	AQR
A3SS	CHERP	ENSG00000085872.10	chr19	-	16632331	16632528	16632331	16632465	16633862	16634101	0.05600	0.00002	0.00171	longer	K562	PUS1
A3SS	CHERP	ENSG00000085872.10	chr19	-	16631222	16631332	16631222	16631318	16631636	16631723	0.06000	0.00305	0.01872	longer	K562	AQR

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHERP

General Information

Functions

Localization

Domains (AlphaFold: CHERP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHERP is not avaliable on ENCORE database.

28 proteins are bound to CHERP RNA:

eCLIP assay for CHERP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHERP is not available on ENCORE database.

108 RBPs can affect the gene expression of CHERP :

The Knockdown/knockout RNA-Seq assay for CHERP is not available on ENCORE database.

2 RBPs can affect the splicing of CHERP :

The Knockdown/knockout RNA-Seq assay for CHERP is not avaliable on ENCORE database.