CHD1

General Information

Gene Name : CHD1
Gene ID : ENSG00000153922.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CHD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHD1	ENSG00000153922.10	77.81	69.18	73.50	ENCSR000AEF
HepG2	CHD1	ENSG00000153922.10	19.83	37.33	28.58	ENCSR985KAT
K562	CHD1	ENSG00000153922.10	40.78	61.09	50.94	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHD1 is not avaliable on ENCORE database.

Proteins bound to RNA

CHD1 RNA is bound by 26 proteins.

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eCLIP assay for CHD1 is not avaliable on ENCORE database.

26 proteins are bound to CHD1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	98191392	98191471	-	3'-UTR,intron-Distal,intron-Proximal	5.65777	400.00000	K562	PUM2
chr5	98191475	98191546	-	3'-UTR,intron-Distal	5.51247	49.33373	K562	PUM2
chr5	98236570	98236685	-	CDS,intron-Distal	6.90740	27.08705	HepG2	BCLAF1
chr5	98217680	98217745	-	CDS,intron-Distal	4.69279	22.54186	K562	ZNF622
chr5	98236568	98236632	-	CDS,intron-Distal	5.39051	20.28602	K562	UCHL5
chr5	98236549	98236685	-	CDS,intron-Distal	3.58696	18.89408	K562	ZNF622
chr5	98191681	98191716	-	3'-UTR,intron-Distal	5.62203	15.30625	K562	PUM2
chr5	98238645	98238668	-	CDS,intron-Distal	4.23044	15.15889	K562	ZNF622
chr5	98216779	98216818	-	CDS,intron-Distal,intron-Proximal	4.55836	14.12560	K562	UCHL5
chr5	98216779	98216818	-	CDS,intron-Distal,intron-Proximal	4.61219	13.85602	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 142 entries

eCLIP assay for CHD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHD1 is not available on ENCORE database.
95 RBPs can affect the levels of CHD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CHD1 is not available on ENCORE database.

95 RBPs can affect the gene expression of CHD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHD1	ENSG00000153922.6	2118.10500	1255.34840	0.75460	17.53270	16.29470	HepG2	TAF15
CHD1	ENSG00000153922.6	5138.46630	3460.60170	0.57020	13.41040	12.09880	K562	RBM15
CHD1	ENSG00000153922.6	2350.69780	3696.98390	-0.65330	12.71780	11.02530	K562	CPSF6
CHD1	ENSG00000153922.6	3045.94610	2210.68170	0.46230	11.67310	10.83400	HepG2	SRFBP1
CHD1	ENSG00000153922.6	2763.17920	1651.45420	0.74250	11.73320	10.41130	HepG2	U2AF1
CHD1	ENSG00000153922.6	2987.88250	1307.15580	1.19260	11.63160	10.26220	HepG2	RAVER1
CHD1	ENSG00000153922.6	2760.47480	4779.03840	-0.79180	12.13450	10.04850	K562	PPIG
CHD1	ENSG00000153922.6	3039.85950	4079.93580	-0.42450	10.52790	9.24050	K562	UPF1
CHD1	ENSG00000153922.6	4223.72660	2860.85880	0.56200	10.72270	9.13440	K562	U2AF2
CHD1	ENSG00000153922.6	3538.95490	2446.29390	0.53260	9.31100	7.79960	K562	SYNCRIP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 108 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHD1 is not available on ENCORE database.

14 RBPs can affect the splicing of CHD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CHD1	ENSG00000153922.6	chr5	-	98204717	98204981	98204198	98204339	98205457	98205586	0.34700	0.00000	0.00000	included	K562	HNRNPA1
SE	CHD1	ENSG00000153922.6	chr5	-	98230300	98230390	98229119	98229310	98231929	98232146	-0.18800	0.00000	0.00005	excluded	K562	U2AF2
A3SS	CHD1	ENSG00000153922.6	chr5	-	98233959	98234160	98233959	98234138	98234367	98234468	0.16100	0.00000	0.00000	longer	K562	AQR
A3SS	CHD1	ENSG00000153922.6	chr5	-	98204198	98204437	98204198	98204339	98205457	98205639	0.12300	0.00000	0.00000	longer	K562	AQR
A3SS	CHD1	ENSG00000153922.6	chr5	-	98221281	98221376	98221281	98221353	98223791	98223944	0.11600	0.00000	0.00000	longer	K562	AQR
A3SS	CHD1	ENSG00000153922.6	chr5	-	98228228	98228446	98228228	98228417	98229119	98229310	0.15800	0.00000	0.00000	longer	K562	AQR
A3SS	CHD1	ENSG00000153922.6	chr5	-	98207754	98207951	98207754	98207905	98208120	98208259	0.07200	0.00000	0.00116	longer	K562	UTP18
SE	CHD1	ENSG00000153922.6	chr5	-	98208120	98208259	98207754	98207905	98209296	98209427	-0.07500	0.00001	0.00039	excluded	K562	PUS1
SE	CHD1	ENSG00000153922.6	chr5	-	98230300	98230390	98229119	98229310	98231929	98232146	-0.14800	0.00001	0.00063	excluded	K562	U2AF1
A3SS	CHD1	ENSG00000153922.6	chr5	-	98212101	98212288	98212101	98212262	98215255	98215481	0.05500	0.00002	0.00024	longer	K562	AQR

Showing 1 to 10 of 38 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHD1

General Information

Functions

Localization

Domains (AlphaFold: CHD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHD1 is not avaliable on ENCORE database.

26 proteins are bound to CHD1 RNA:

eCLIP assay for CHD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHD1 is not available on ENCORE database.

95 RBPs can affect the gene expression of CHD1 :

The Knockdown/knockout RNA-Seq assay for CHD1 is not available on ENCORE database.

14 RBPs can affect the splicing of CHD1 :

The Knockdown/knockout RNA-Seq assay for CHD1 is not avaliable on ENCORE database.