C12orf49

General Information

Gene Name : C12orf49
Gene ID : ENSG00000111412.5
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C12orf49)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	C12orf49	ENSG00000111412.5	5.85	7.74	6.79	ENCSR000AEF
HepG2	C12orf49	ENSG00000111412.5	15.53	16.44	15.98	ENCSR985KAT
K562	C12orf49	ENSG00000111412.5	8.04	5.37	6.71	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C12orf49 is not avaliable on ENCORE database.

Proteins bound to RNA

C12orf49 RNA is bound by 4 proteins.

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eCLIP assay for C12orf49 is not avaliable on ENCORE database.

4 proteins are bound to C12orf49 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	117175705	117175842	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.11612	57.77022	HepG2	DDX3X
chr12	117175600	117175705	-	CDS,intron-Distal,intron-Proximal	6.51073	32.26318	HepG2	DDX3X
chr12	117175012	117175180	-	intron-Distal	6.58368	16.44511	HepG2	PCBP2
chr12	117175417	117175516	-	intron-Distal	5.96735	15.50831	HepG2	PCBP2
chr12	117175198	117175272	-	intron-Distal	5.71006	10.66887	HepG2	PCBP2
chr12	117153970	117154147	-	3'-UTR,intron-Distal	4.79454	6.44805	K562	IGF2BP1
chr12	117155213	117155272	-	3'-UTR,intron-Distal,intron-Proximal	5.55903	4.37209	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 7 of 7 entries

eCLIP assay for C12orf49 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C12orf49 is not available on ENCORE database.
116 RBPs can affect the levels of C12orf49.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for C12orf49 is not available on ENCORE database.

116 RBPs can affect the gene expression of C12orf49 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C12orf49	ENSG00000111412.4	1719.03290	565.37760	1.60420	62.99580	61.23310	HepG2	NELFE
C12orf49	ENSG00000111412.4	1584.17130	552.07870	1.52070	58.58440	57.04160	HepG2	SRSF1
C12orf49	ENSG00000111412.4	295.14700	929.60980	-1.65520	45.57810	43.06880	HepG2	EIF4G1
C12orf49	ENSG00000111412.4	1379.95560	604.97060	1.18960	40.13990	38.34120	HepG2	PUS1
C12orf49	ENSG00000111412.4	192.21640	602.33850	-1.64780	37.06120	35.16430	HepG2	ZC3H8
C12orf49	ENSG00000111412.4	324.97350	862.91850	-1.40890	37.15030	35.15070	HepG2	HNRNPU
C12orf49	ENSG00000111412.4	314.94470	768.47620	-1.28690	30.05610	28.25490	HepG2	SAFB2
C12orf49	ENSG00000111412.4	1501.96760	495.65350	1.59930	28.98970	27.12240	HepG2	MATR3
C12orf49	ENSG00000111412.4	157.84720	642.79280	-2.02580	28.41750	25.37210	HepG2	SMNDC1
C12orf49	ENSG00000111412.4	1782.40250	780.96200	1.19040	26.53180	24.90230	HepG2	HNRNPA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 126 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C12orf49 is not available on ENCORE database.

5 RBPs can affect the splicing of C12orf49 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	C12orf49	ENSG00000111412.4	chr12	-	117157567	117157681	117160871	117161028	117153592	117155698	117175594	117175866	0.23400	0.00003	0.00035	1included	HepG2	U2AF2
SE	C12orf49	ENSG00000111412.4	chr12	-	117172962	117173101			117160871	117161028	117175594	117175866	-0.13500	0.00033	0.00550	excluded	HepG2	U2AF2
SE	C12orf49	ENSG00000111412.4	chr12	-	117157567	117157681			117153592	117155698	117175594	117175866	-0.12700	0.00090	0.06089	excluded	HepG2	HNRNPL
SE	C12orf49	ENSG00000111412.4	chr12	-	117160871	117161028			117158100	117158252	117175594	117175866	0.14900	0.00142	0.05815	included	HepG2	SFPQ
SE	C12orf49	ENSG00000111412.4	chr12	-	117158100	117158252			117157567	117157681	117160871	117161028	-0.14400	0.00384	0.06143	excluded	HepG2	U2AF1
A3SS	C12orf49	ENSG00000111412.4	chr12	-	117158100	117158303			117158100	117158252	117160871	117161028	0.09200	0.00676	0.03764	longer	K562	AQR
SE	C12orf49	ENSG00000111412.4	chr12	-	117160871	117161028			117158100	117158252	117175594	117175866	0.12700	0.00932	0.08635	included	HepG2	U2AF2

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C12orf49

General Information

Functions

Localization

Domains (AlphaFold: C12orf49)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C12orf49 is not avaliable on ENCORE database.

4 proteins are bound to C12orf49 RNA:

eCLIP assay for C12orf49 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C12orf49 is not available on ENCORE database.

116 RBPs can affect the gene expression of C12orf49 :

The Knockdown/knockout RNA-Seq assay for C12orf49 is not available on ENCORE database.

5 RBPs can affect the splicing of C12orf49 :

The Knockdown/knockout RNA-Seq assay for C12orf49 is not avaliable on ENCORE database.