ABCB1

General Information

Gene Name : ABCB1
Gene ID : ENSG00000085563.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ABCB1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ABCB1	ENSG00000085563.14	1.31	1.11	1.21	ENCSR000AEF
HepG2	ABCB1	ENSG00000085563.14	20.94	19.46	20.20	ENCSR985KAT
K562	ABCB1	ENSG00000085563.14	0.37	0.35	0.36	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ABCB1 is not avaliable on ENCORE database.

Proteins bound to RNA

ABCB1 RNA is bound by 4 proteins.

CanvasJS.com

eCLIP assay for ABCB1 is not avaliable on ENCORE database.

4 proteins are bound to ABCB1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	87144606	87144652	-	CDS,intron-Distal	6.66026	18.64159	HepG2	SND1
chr7	87144546	87144606	-	CDS,intron-Distal,intron-Proximal	5.63047	16.14425	HepG2	SND1
chr7	87138693	87138763	-	CDS,intron-Distal	4.62795	13.28274	HepG2	SND1
chr7	87178687	87178773	-	CDS,intron-Distal	4.77603	12.50669	HepG2	SND1
chr7	87144652	87144703	-	CDS,intron-Distal	4.58888	10.65228	HepG2	SND1
chr7	87183095	87183149	-	CDS,intron-Distal	4.50528	7.48518	HepG2	SND1
chr7	87160061	87160141	-	intron-Distal	4.83334	7.13376	HepG2	PTBP1
chr7	87179535	87179610	-	CDS,intron-Distal,intron-Proximal	3.71566	6.39464	HepG2	BCLAF1
chr7	87178773	87178824	-	CDS,intron-Distal	3.87618	6.16691	HepG2	SND1
chr7	87196102	87196166	-	CDS,intron-Distal	3.94142	5.82787	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 17 entries

eCLIP assay for ABCB1 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for ABCB1 is not available on ENCORE database.
131 RBPs can affect the levels of ABCB1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ABCB1 is not available on ENCORE database.

131 RBPs can affect the gene expression of ABCB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ABCB1	ENSG00000085563.10	4870.33190	1830.30160	1.41180	105.00250	103.04160	HepG2	SRFBP1
ABCB1	ENSG00000085563.10	3093.61960	1319.03720	1.22970	46.16200	44.27510	HepG2	PUS1
ABCB1	ENSG00000085563.10	3235.90580	1754.06090	0.88340	45.50540	43.98360	HepG2	ZNF622
ABCB1	ENSG00000085563.10	2605.66010	1421.29240	0.87430	39.99620	38.28370	HepG2	PUM1
ABCB1	ENSG00000085563.10	2998.27400	1594.87520	0.91060	38.23920	36.27040	HepG2	UPF1
ABCB1	ENSG00000085563.10	4472.57860	1625.69890	1.45990	37.86400	35.69690	HepG2	IGF2BP2
ABCB1	ENSG00000085563.10	2149.55420	1105.08720	0.95980	37.61610	35.66810	HepG2	SAFB2
ABCB1	ENSG00000085563.10	3493.59730	1327.09930	1.39630	37.22110	34.85520	HepG2	U2AF1
ABCB1	ENSG00000085563.10	2832.50070	1315.50150	1.10640	26.67060	25.09610	HepG2	CELF1
ABCB1	ENSG00000085563.10	2852.40780	1148.69330	1.31210	26.46600	24.76700	HepG2	SUPV3L1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 142 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ABCB1

General Information

Functions

Localization

Domains (AlphaFold: ABCB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ABCB1 is not avaliable on ENCORE database.

4 proteins are bound to ABCB1 RNA:

eCLIP assay for ABCB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ABCB1 is not available on ENCORE database.

131 RBPs can affect the gene expression of ABCB1 :

The Knockdown/knockout RNA-Seq assay for ABCB1 is not available on ENCORE database.

No RBPs affect the alternative splcing events of ABCB1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for ABCB1 is not avaliable on ENCORE database.