ZNF473

General Information

Gene Name       : ZNF473
Gene ID             : ENSG00000142528.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF473)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF473ENSG00000142528.155.775.075.42ENCSR000AEF
HepG2ZNF473ENSG00000142528.157.309.918.61ENCSR985KAT
K562ZNF473ENSG00000142528.1518.8720.1819.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZNF473Ribo-STAMP-293TshRNABGRSLV03-63,BGRSLV03-64BGRSLV03-1,BGRSLV03-2NotSatisfiedENCORE2
ZNF473Ribo-STAMP-293TshRNABGRSLV08-33,BGRSLV08-34BGRSLV08-1,BGRSLV08-2NotSatisfiedENCORE2
ZNF473Ribo-STAMP-293TshRNABGRSLV09-51,BGRSLV09-52BGRSLV09-1,BGRSLV09-2NotSatisfiedENCORE2
ZNF473Ribo-STAMP-293TshRNABGRSLV09-53,BGRSLV09-54BGRSLV09-1,BGRSLV09-2NotSatisfiedENCORE2
ZNF473Ribo-STAMP-293TshRNABGRSDLV02-89,BGRSDLV02-90BGRSDLV02-1,BGRSDLV02-2SubmittedENCORE2
ZNF473Ribo-STAMP-293TshRNAZNF473-BGRSDLV02-91dox,ZNF473-BGRSDLV02-92doxZNF473-BGRSDLV02-89,ZNF473-BGRSDLV02-90,SubmittedENCORE2
ZNF473Ribo-STAMP-293TshRNABGRSDTLV02-89tot,BGRSDTLV02-90totBGRSDTLV02-1,BGRSDTLV02-2SubmittedENCORE2
ZNF473Ribo-STAMP-293TshRNAZNF473-BGRSDTLV02-91doxtot,ZNF473-BGRSDTLV02-92doxtotNT-BGRSDTLV02-3doxtot,NT-BGRSDTLV02-4doxtot,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF473 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF473 RNA is bound by 3 proteins.  







eCLIP assay for ZNF473 is not avaliable on ENCORE database.





3 proteins are bound to ZNF473 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195052932750529380+5'-UTR,intron-Proximal4.512344.26442K562DDX3X
chr195054940050549456+CDS,intron-Distal4.170813.87995K562UCHL5
chr195054997950550035+CDS,intron-Distal3.197543.34231K562RBM15
chr195055023850550282+CDS,intron-Distal4.163633.73926K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF473 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF473 is not available on ENCORE database.

  • 69 RBPs can affect the levels of ZNF473.  








The Knockdown/knockout RNA-Seq assay for ZNF473 is not available on ENCORE database.





69 RBPs can affect the gene expression of ZNF473 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF473ENSG00000142528.11329.70990424.97440-0.366202.180401.55790HepG2AUH
ZNF473ENSG00000142528.11147.10910237.94590-0.693703.077402.45310HepG2EIF2S1
ZNF473ENSG00000142528.11401.56020262.983000.610503.386002.68060HepG2EIF4A3
ZNF473ENSG00000142528.11231.22650387.59330-0.745205.005803.93080HepG2EIF4G2
ZNF473ENSG00000142528.11175.79100299.20580-0.767302.252101.34520HepG2FTO
ZNF473ENSG00000142528.11192.99850338.60310-0.811004.733203.91000HepG2GPKOW
ZNF473ENSG00000142528.11306.47770418.47710-0.449403.220302.45130HepG2HNRNPF
ZNF473ENSG00000142528.11203.49650323.13470-0.667103.596002.88820HepG2HNRNPLL
ZNF473ENSG00000142528.11321.83990412.07950-0.356602.030001.40350HepG2IGF2BP1
ZNF473ENSG00000142528.11537.06420265.355801.017109.589708.38610HepG2MAGOH
ZNF473ENSG00000142528.11189.04700286.51660-0.599902.783202.03210HepG2NSUN2
ZNF473ENSG00000142528.11287.66280388.18250-0.432402.136001.60320HepG2PUF60
ZNF473ENSG00000142528.11564.66790411.781800.455403.656002.89020HepG2PUM2
ZNF473ENSG00000142528.11776.01010407.820100.9280014.4068013.41280HepG2RBM22
ZNF473ENSG00000142528.11207.17850298.43490-0.526502.151701.44610HepG2RPS3A
ZNF473ENSG00000142528.11985.51500353.718801.4782018.8546017.02860HepG2SF3A3
ZNF473ENSG00000142528.11265.86140372.26030-0.485603.132202.39310HepG2SLBP
ZNF473ENSG00000142528.11353.61410460.61610-0.381402.700702.20270HepG2SRFBP1
ZNF473ENSG00000142528.11429.18620276.766400.632802.847102.36890HepG2SRSF1
ZNF473ENSG00000142528.11305.37660411.14320-0.429103.049802.32500HepG2SRSF7
ZNF473ENSG00000142528.11148.36730283.22080-0.932804.960404.09570HepG2SUPV3L1
ZNF473ENSG00000142528.11212.77050282.72490-0.410102.240601.72260HepG2TRIM56
ZNF473ENSG00000142528.11516.79890305.975600.756105.868604.97000HepG2U2AF1
ZNF473ENSG00000142528.11205.31880313.69470-0.611504.380603.53550HepG2UPF1
ZNF473ENSG00000142528.11452.01300302.859600.577604.901004.14250HepG2UTP3
ZNF473ENSG00000142528.111099.80590634.273200.7940010.786608.49410K562AARS
ZNF473ENSG00000142528.11484.33930793.22070-0.711704.385103.69950K562AGGF1
ZNF473ENSG00000142528.11640.43470871.49540-0.444402.195101.33060K562AKAP8
ZNF473ENSG00000142528.11470.06470825.34910-0.812105.517004.57820K562AKAP8L
ZNF473ENSG00000142528.115867.795801384.855602.0830089.2138086.35810K562AQR
ZNF473ENSG00000142528.112491.983001398.869100.8329026.2055024.39400K562DDX47
ZNF473ENSG00000142528.11588.77910903.15810-0.617304.409802.75890K562EEF2
ZNF473ENSG00000142528.111210.96140872.540600.472803.907602.80790K562EFTUD2
ZNF473ENSG00000142528.11622.31940456.706500.446303.165901.86120K562EIF2S1
ZNF473ENSG00000142528.111198.280801452.28810-0.277402.788502.06730K562EIF2S2
ZNF473ENSG00000142528.11832.78430520.170800.678903.688102.50870K562EIF3A
ZNF473ENSG00000142528.11959.04480634.916100.594907.540206.23480K562EIF3G
ZNF473ENSG00000142528.111592.14130434.456001.8736054.4773050.79760K562EIF4A3
ZNF473ENSG00000142528.11605.45850391.213600.630003.103801.86220K562EIF4B
ZNF473ENSG00000142528.111437.71570451.809201.6699059.0415056.50970K562FXR1
ZNF473ENSG00000142528.11715.82610426.398700.747305.607504.52020K562G3BP2
ZNF473ENSG00000142528.11771.446301008.67960-0.386802.981302.15730K562GPKOW
ZNF473ENSG00000142528.11392.44270675.54270-0.783603.575402.12970K562HNRNPA2B1
ZNF473ENSG00000142528.111281.10550693.890800.8845014.4639013.18600K562HNRNPC
ZNF473ENSG00000142528.11791.40170619.703300.352702.488501.41680K562HNRNPF
ZNF473ENSG00000142528.111834.226201264.089700.537007.038205.27140K562HNRNPL
ZNF473ENSG00000142528.111571.119301155.453400.443203.413102.37100K562HNRNPM
ZNF473ENSG00000142528.11550.48300876.01740-0.670303.326002.41220K562KIF1C
ZNF473ENSG00000142528.111826.93910662.549501.4632014.5935012.54670K562MAGOH
ZNF473ENSG00000142528.11866.02340661.161500.389303.170502.17920K562MATR3
ZNF473ENSG00000142528.111437.767501051.009900.452007.045905.80620K562MTPAP
ZNF473ENSG00000142528.11460.69750687.84130-0.578302.750801.87060K562NAA15
ZNF473ENSG00000142528.11656.61960433.884100.597605.361403.65660K562NCBP2
ZNF473ENSG00000142528.112679.451501937.973000.467303.335401.67840K562NOL12
ZNF473ENSG00000142528.11384.92580590.92340-0.618402.317501.42770K562PABPN1
ZNF473ENSG00000142528.11938.25330589.452300.670507.419605.78660K562PCBP2
ZNF473ENSG00000142528.111603.97780849.086300.9176013.6226011.94820K562PRPF8
ZNF473ENSG00000142528.111422.03370643.730001.1433017.6880016.08030K562PTBP1
ZNF473ENSG00000142528.114087.875301933.619501.0799012.1709010.44860K562PUF60
ZNF473ENSG00000142528.112865.703102055.742800.479103.312702.13980K562PUM1
ZNF473ENSG00000142528.11401.02760818.75610-1.029706.145405.37500K562PUS1
ZNF473ENSG00000142528.11503.22080797.55870-0.664403.785903.10830K562RBM15
ZNF473ENSG00000142528.111010.21800617.102500.711008.506506.91520K562RBM22
ZNF473ENSG00000142528.111049.83120649.438500.692807.565805.67900K562NELFE
ZNF473ENSG00000142528.111338.22520864.782800.629805.680904.50580K562RPS19
ZNF473ENSG00000142528.111388.01630945.868500.553202.948301.30520K562RPS3A
ZNF473ENSG00000142528.11862.92150495.488500.800307.664705.88710K562RPS3
ZNF473ENSG00000142528.111334.79390870.598800.616406.282604.65640K562SAFB
ZNF473ENSG00000142528.111391.36120900.067600.628307.233704.91520K562SDAD1
ZNF473ENSG00000142528.111399.657401152.238000.280502.666401.86590K562SF3A3
ZNF473ENSG00000142528.11905.51290443.659001.0292018.9036016.47860K562SF3B4
ZNF473ENSG00000142528.111532.441401180.479400.376405.721604.43720K562SRPK2
ZNF473ENSG00000142528.11997.46600631.102400.660308.153706.94960K562SRSF1
ZNF473ENSG00000142528.111733.34500979.986100.8226016.4875014.50720K562SYNCRIP
ZNF473ENSG00000142528.11896.68210638.647000.489503.977403.12170K562TARDBP
ZNF473ENSG00000142528.11773.80730598.406300.370702.184001.36220K562TIAL1
ZNF473ENSG00000142528.11893.40440413.633001.110908.264506.21550K562U2AF1
ZNF473ENSG00000142528.11849.76170427.090100.9924016.8262014.80000K562U2AF2
ZNF473ENSG00000142528.112013.218801101.763700.8696028.6720026.44690K562WDR43
ZNF473ENSG00000142528.111362.74350774.920500.814304.673702.47780K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF473 is not available on ENCORE database.





5 RBPs can affect the splicing of ZNF473 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF473ENSG00000142528.11chr19+505341485053434850529211505293795054241750542544-0.270000.000460.02022excludedK562PRPF8
SEZNF473ENSG00000142528.11chr19+505341485053434850529211505293795054241750542544-0.259000.000760.04202excludedK562EFTUD2
A3SSZNF473ENSG00000142528.11chr19+5053414850534348505342705053434850529149505293790.417000.000000.00608longerK562HNRNPA1
A3SSZNF473ENSG00000142528.11chr19+5053414850534348505342705053434850529149505293790.165000.018490.08916longerK562AQR
A3SSZNF473ENSG00000142528.11chr19+5053414850534348505342705053434850529149505293790.468000.000230.03253longerK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF473 is not avaliable on ENCORE database.