RNF187

General Information

Gene Name : RNF187
Gene ID : ENSG00000168159.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNF187)

Not Available

Antibody Validation

Thermo Fisher: PA5-56340

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF187	ENSG00000168159.11	9.66	25.64	17.65	ENCSR000AEF
HepG2	RNF187	ENSG00000168159.11	35.43	18.44	26.94	ENCSR985KAT
K562	RNF187	ENSG00000168159.11	43.94	36.27	40.11	ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
eCLIP	eCLIP: 4142	ENCSR153STI	RNF187	K562	Released	ENCAB212BNU	ENCSR254NWE
knockdown followed by RNA-seq	RNF187-BGKcLV19-K562	ENCSR050ONB	RNF187	K562	Released		ENCSR978MMZ	CRISPR	KD% = 76.4,73.2
knockdown followed by RNA-seq	RNF187-BGHcLV20-HepG2	ENCSR637CZY	RNF187	HepG2	Released		ENCSR306EWE	CRISPR	KD% = 95.3,98.7

eCLIP

RBP	Exp_UID	Cell_Line	ENCODE_ACCESSION	Control_ENCODE_ACCESSION	ENCODE_Antibody_ID	Antibody	Lot_num	Status	Project
RNF187	4142	K562	ENCSR153STI	ENCSR254NWE	ENCAB212BNU	PA5-56340	UF2796809A	Released	ENCODE4

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
RNF187	ENCAB212BNU	PA5-56340	UF2796809A				BGHcLV20-27, Released, ENCODE4	BGKcLV19-39, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
RNF187	K562	CRISPR	ENCSR050ONB	ENCSR978MMZ	RNF187-BGKcLV19-39,RNF187-BGKcLV19-40	NT-BGKcLV19-1,NT-BGKcLV19-2	76.4,73.2	Released	ENCODE4
RNF187	HepG2	CRISPR	ENCSR637CZY	ENCSR306EWE	RNF187-BGHcLV20-27,RNF187-BGHcLV20-28	NT-BGHcLV20-1,NT-BGHcLV20-2	95.3,98.7	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
RNF187	Product_ID: PA5-56340 Lot_ID: UF2796809A Source: Thermo Fisher Target Name: RNF187-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF187 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF187 RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for RNF187 is not avaliable on ENCORE database.

26 proteins are bound to RNF187 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	228682389	228682456	+	3'-UTR	5.60566	400.00000	K562	UPF1
chr1	228682436	228682494	+	3'-UTR	5.62047	400.00000	K562	PABPC4
chr1	228682340	228682389	+	3'-UTR	5.02541	86.42670	K562	UPF1
chr1	228680842	228680915	+	CDS	6.57825	69.66311	K562	UPF1
chr1	228682456	228682474	+	3'-UTR	5.71453	58.86771	K562	UPF1
chr1	228681877	228681941	+	3'-UTR,intron-Distal	5.32358	56.75963	K562	UPF1
chr1	228682540	228682635	+	3'-UTR	5.30669	54.66418	K562	UPF1
chr1	228682257	228682305	+	3'-UTR,intron-Proximal	4.43684	53.07844	K562	UPF1
chr1	228682474	228682500	+	3'-UTR	5.36822	48.03052	K562	UPF1
chr1	228682383	228682436	+	3'-UTR	4.03953	40.74497	K562	PABPC4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 99 entries

eCLIP assay for RNF187 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for RNF187 is not available on ENCORE database.
103 RBPs can affect the levels of RNF187.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RNF187 is not available on ENCORE database.

103 RBPs can affect the gene expression of RNF187 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF187	ENSG00000168159.9	4125.31610	2073.67100	0.99220	38.43620	36.37170	K562	EIF2S2
RNF187	ENSG00000168159.9	3378.14060	1866.56650	0.85570	31.11250	29.47840	HepG2	ETF1
RNF187	ENSG00000168159.9	3100.52240	1350.10740	1.19930	20.49200	19.01850	HepG2	DDX6
RNF187	ENSG00000168159.9	4634.85790	2057.91480	1.17120	20.34970	18.34450	K562	HSPD1
RNF187	ENSG00000168159.9	1400.97340	771.22480	0.86110	16.76700	15.72360	HepG2	TIAL1
RNF187	ENSG00000168159.9	790.97540	1307.27870	-0.72490	16.42610	15.28350	HepG2	SRSF9
RNF187	ENSG00000168159.9	2994.42690	1340.45350	1.15950	17.10150	15.07000	HepG2	LARP4
RNF187	ENSG00000168159.9	1737.41160	1125.74280	0.62600	12.78130	11.59690	HepG2	CELF1
RNF187	ENSG00000168159.9	1557.30940	1044.14100	0.57660	12.37230	11.22910	HepG2	PUS1
RNF187	ENSG00000168159.9	1412.90470	948.04390	0.57550	12.48900	10.98510	HepG2	DDX19B
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF187

General Information

Functions

Localization

Domains (AlphaFold: RNF187)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF187 is not avaliable on ENCORE database.

26 proteins are bound to RNF187 RNA:

eCLIP assay for RNF187 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF187 is not available on ENCORE database.

103 RBPs can affect the gene expression of RNF187 :

The Knockdown/knockout RNA-Seq assay for RNF187 is not available on ENCORE database.

No RBPs affect the alternative splcing events of RNF187 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RNF187 is not avaliable on ENCORE database.