ZMAT5

General Information

Gene Name       : ZMAT5
Gene ID             : ENSG00000100319.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: ZMAT5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZMAT5ENSG00000100319.123.6010.617.10ENCSR000AEF
HepG2ZMAT5ENSG00000100319.1218.379.1413.76ENCSR985KAT
K562ZMAT5ENSG00000100319.1213.9010.2912.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZMAT5Ribo-STAMP-293TshRNAZMAT5-BGRSLV03-55,ZMAT5-BGRSLV03-56NT-BGRSLV03-1,NT-BGRSLV03-2,SubmittedENCORE2
ZMAT5Ribo-STAMP-293TshRNABGRSDLV02-65,BGRSDLV02-66BGRSDLV02-1,BGRSDLV02-2SubmittedENCORE2
ZMAT5Ribo-STAMP-293TshRNAZMAT5-BGRSDLV02-67dox,ZMAT5-BGRSDLV02-68doxZMAT5-BGRSDLV02-65,ZMAT5-BGRSDLV02-66,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZMAT5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZMAT5 RNA is bound by 2 proteins.  







eCLIP assay for ZMAT5 is not avaliable on ENCORE database.





2 proteins are bound to ZMAT5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223012700530127168-3'-UTR,intron-Distal4.352494.49605HepG2UPF1
chr223012709630127201-3'-UTR,intron-Distal3.228513.54552HepG2LARP4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZMAT5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZMAT5 is not available on ENCORE database.

  • 38 RBPs can affect the levels of ZMAT5.  








The Knockdown/knockout RNA-Seq assay for ZMAT5 is not available on ENCORE database.





38 RBPs can affect the gene expression of ZMAT5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZMAT5ENSG00000100319.11333.55850209.738600.669203.714702.80870HepG2ASCC1
ZMAT5ENSG00000100319.11149.87820273.55690-0.868106.643705.65140HepG2AUH
ZMAT5ENSG00000100319.11177.94240111.224900.677802.452701.88560HepG2BOP1
ZMAT5ENSG00000100319.1199.78100200.51810-1.006904.859304.08520HepG2EIF2S1
ZMAT5ENSG00000100319.11187.57700314.11620-0.743805.754304.94010HepG2ETF1
ZMAT5ENSG00000100319.11181.36370279.74360-0.625202.519401.78120HepG2FIP1L1
ZMAT5ENSG00000100319.1138.84150102.29300-1.397003.172202.08180HepG2FTO
ZMAT5ENSG00000100319.11235.32140167.025600.494502.451801.77410HepG2HNRNPF
ZMAT5ENSG00000100319.11171.84320110.438800.637702.142201.58140HepG2HNRNPLL
ZMAT5ENSG00000100319.11164.39580113.302700.536902.201401.65440HepG2HNRNPU
ZMAT5ENSG00000100319.1191.59140224.92090-1.296107.425406.43020HepG2MATR3
ZMAT5ENSG00000100319.11130.72100205.01100-0.649202.639801.93340HepG2PABPC4
ZMAT5ENSG00000100319.11172.33680233.72290-0.439601.944501.42120HepG2PCBP1
ZMAT5ENSG00000100319.11155.27130237.83240-0.615203.229102.64720HepG2PTBP1
ZMAT5ENSG00000100319.11239.10870177.971800.425901.994501.47460HepG2PUM1
ZMAT5ENSG00000100319.11172.95160257.55570-0.574502.808702.17960HepG2QKI
ZMAT5ENSG00000100319.11164.62580262.53540-0.673304.126103.52580HepG2RBM22
ZMAT5ENSG00000100319.11186.58570264.67580-0.504402.368301.86080HepG2NELFE
ZMAT5ENSG00000100319.11228.11520160.743200.504902.387901.72940HepG2SLBP
ZMAT5ENSG00000100319.11164.99290104.284000.661802.437401.54160HepG2SMNDC1
ZMAT5ENSG00000100319.11216.95780296.51080-0.450702.539302.05200HepG2SRFBP1
ZMAT5ENSG00000100319.11182.21680258.44350-0.504202.284101.84360HepG2SRSF1
ZMAT5ENSG00000100319.11138.53390210.26430-0.602003.125602.54610HepG2SRSF9
ZMAT5ENSG00000100319.11103.95810232.32070-1.160108.464207.57090HepG2TAF15
ZMAT5ENSG00000100319.11174.70780110.099300.666002.896302.38700HepG2TIAL1
ZMAT5ENSG00000100319.11256.80960163.784000.648803.222902.27270HepG2TUFM
ZMAT5ENSG00000100319.1149.48220109.29440-1.143202.699201.70640HepG2UPF2
ZMAT5ENSG00000100319.11384.03200268.745500.514903.497302.87220K562AGGF1
ZMAT5ENSG00000100319.11112.55310243.24150-1.111806.535804.51730K562APOBEC3C
ZMAT5ENSG00000100319.11383.30340237.154400.692605.990905.08420K562DDX47
ZMAT5ENSG00000100319.11397.31880300.923000.400802.388301.58300K562DKC1
ZMAT5ENSG00000100319.11204.15210141.141700.532402.103901.36060K562FIP1L1
ZMAT5ENSG00000100319.1166.27880119.77050-0.853702.819001.68100K562FKBP4
ZMAT5ENSG00000100319.1113.8568067.15740-2.277007.076605.83240K562G3BP2
ZMAT5ENSG00000100319.11293.78960213.625000.459601.965201.32210K562GRSF1
ZMAT5ENSG00000100319.11102.88760196.04920-0.930103.542902.12770K562PABPC1
ZMAT5ENSG00000100319.11192.5179091.495601.073104.892603.80540K562RPS19
ZMAT5ENSG00000100319.11167.71130106.905700.649502.354101.42610K562SRFBP1
ZMAT5ENSG00000100319.11149.1628099.355300.586102.022801.41190K562TARDBP
ZMAT5ENSG00000100319.11188.36170126.301100.576502.117401.30600K562TRIM56
ZMAT5ENSG00000100319.1196.46740206.06470-1.095005.346603.02530K562UPF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZMAT5 is not available on ENCORE database.





3 RBPs can affect the splicing of ZMAT5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZMAT5ENSG00000100319.11chr22-301507373015085230144406301445603016286030162969-0.184000.003400.09197excludedK562PRPF8
SEZMAT5ENSG00000100319.11chr22-301507373015085230144406301445603016286030162969-0.184000.001290.06156excludedK562EFTUD2
SEZMAT5ENSG00000100319.11chr22-301507373015085230144423301445603016286030162969-0.124000.000490.02199excludedK562HNRNPU
SEZMAT5ENSG00000100319.11chr22-301507373015085230144406301445603016286030162969-0.272000.000200.01216excludedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZMAT5 is not avaliable on ENCORE database.