TSSC2

General Information

Gene Name : TSSC2
Gene ID : ENSG00000223756.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TSSC2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TSSC2	ENSG00000223756.6	0.00	0.01	0.01	ENCSR000AEF
HepG2	TSSC2	ENSG00000223756.6	0.00	0.00	0.00	ENCSR985KAT
K562	TSSC2	ENSG00000223756.6	32.02	26.44	29.23	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TSSC2 is not avaliable on ENCORE database.

Proteins bound to RNA

TSSC2 RNA is bound by 15 proteins.

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eCLIP assay for TSSC2 is not avaliable on ENCORE database.

15 proteins are bound to TSSC2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	3412793	3412889	+	intron-Distal	4.12447	37.94554	K562	SLTM
chr11	3415186	3415267	+	intron-Distal	4.71613	24.71444	K562	SLTM
chr11	3412794	3412880	+	intron-Distal	3.54574	23.05429	K562	SAFB2
chr11	3415185	3415265	+	intron-Distal	3.30681	18.73537	K562	SAFB2
chr11	3415096	3415186	+	intron-Distal	3.55294	17.16775	K562	SLTM
chr11	3406034	3406102	+	intron-Distal,intron-Proximal	4.45683	16.58398	K562	KHSRP
chr11	3411617	3411756	+	intron-Distal	4.90666	16.10355	K562	NONO
chr11	3412353	3412429	+	intron-Distal	5.61416	15.32788	K562	SAFB2
chr11	3406171	3406297	+	intron-Distal,intron-Proximal	4.04310	14.39377	K562	KHSRP
chr11	3415265	3415341	+	intron-Distal	4.68216	13.70267	K562	SAFB2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 69 entries

eCLIP assay for TSSC2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TSSC2 is not available on ENCORE database.
39 RBPs can affect the levels of TSSC2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TSSC2 is not available on ENCORE database.

39 RBPs can affect the gene expression of TSSC2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TSSC2	ENSG00000223756.2	1718.39010	1020.98510	0.75100	24.06290	22.19140	K562	NSUN2
TSSC2	ENSG00000223756.2	355.56620	671.45090	-0.91720	11.64380	10.20170	K562	SRSF1
TSSC2	ENSG00000223756.2	1610.41120	1082.57090	0.57290	11.51200	10.17100	K562	UPF1
TSSC2	ENSG00000223756.2	1519.35120	926.32380	0.71380	11.23230	9.41290	K562	WDR3
TSSC2	ENSG00000223756.2	417.18110	786.42490	-0.91460	10.39850	8.93770	K562	PRPF8
TSSC2	ENSG00000223756.2	1623.39030	1007.42730	0.68820	10.13130	8.64290	K562	SF3A3
TSSC2	ENSG00000223756.2	1542.70540	1015.27960	0.60350	8.54090	6.75030	K562	HNRNPA1
TSSC2	ENSG00000223756.2	1279.61050	918.88950	0.47760	7.36040	6.09690	K562	MTPAP
TSSC2	ENSG00000223756.2	1283.57300	894.03770	0.52170	6.74790	5.21930	K562	BCLAF1
TSSC2	ENSG00000223756.2	691.47930	977.48630	-0.49940	6.22480	5.20990	K562	EIF2S2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 39 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TSSC2 is not available on ENCORE database.

18 RBPs can affect the splicing of TSSC2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	TSSC2	ENSG00000223756.2	chr11	+	3406128	3406198	3418346	3418636	3405396	3405514	3422988	3423097	-0.34700	0.00000	0.00002	2included	K562	TRA2A
MXE	TSSC2	ENSG00000223756.2	chr11	+	3406128	3406198	3418346	3418636	3405396	3405514	3422988	3423097	-0.29700	0.00000	0.00019	2included	K562	IGF2BP2
MXE	TSSC2	ENSG00000223756.2	chr11	+	3424822	3424882	3427728	3427927	3424144	3424186	3428851	3428927	0.43400	0.00004	0.00135	1included	K562	SRSF1
SE	TSSC2	ENSG00000223756.2	chr11	+	3406128	3406198			3405396	3405514	3422988	3423097	-0.29500	0.00008	0.00205	excluded	K562	PUS1
SE	TSSC2	ENSG00000223756.2	chr11	+	3428851	3428927			3426062	3426193	3429915	3430040	-0.37600	0.00018	0.01762	excluded	K562	HNRNPL
RI	TSSC2	ENSG00000223756.2	chr11	+	3427728	3428927			3427728	3427945	3428851	3428927	-0.19700	0.00031	0.03598	excluded	K562	XRN2
MXE	TSSC2	ENSG00000223756.2	chr11	+	3406128	3406198	3418346	3418636	3405396	3405514	3422988	3423097	-0.18700	0.00043	0.08202	2included	K562	EXOSC5
MXE	TSSC2	ENSG00000223756.2	chr11	+	3406128	3406198	3418346	3418636	3405396	3405514	3422988	3423097	-0.21900	0.00055	0.03161	2included	K562	TIA1
MXE	TSSC2	ENSG00000223756.2	chr11	+	3426062	3426193	3428851	3428927	3424822	3424882	3429915	3430040	0.44400	0.00059	0.01282	1included	K562	SRSF1
A3SS	TSSC2	ENSG00000223756.2	chr11	+	3426062	3426193			3426083	3426193	3424822	3424882	0.09100	0.00070	0.03667	longer	K562	PUS1

Showing 1 to 10 of 26 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TSSC2

General Information

Functions

Localization

Domains (AlphaFold: TSSC2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TSSC2 is not avaliable on ENCORE database.

15 proteins are bound to TSSC2 RNA:

eCLIP assay for TSSC2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TSSC2 is not available on ENCORE database.

39 RBPs can affect the gene expression of TSSC2 :

The Knockdown/knockout RNA-Seq assay for TSSC2 is not available on ENCORE database.

18 RBPs can affect the splicing of TSSC2 :

The Knockdown/knockout RNA-Seq assay for TSSC2 is not avaliable on ENCORE database.