TCTN3

General Information

Gene Name       : TCTN3
Gene ID             : ENSG00000119977.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TCTN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TCTN3ENSG00000119977.2021.1021.1821.14ENCSR000AEF
HepG2TCTN3ENSG00000119977.2028.3244.4136.36ENCSR985KAT
K562TCTN3ENSG00000119977.2015.6015.4015.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TCTN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TCTN3 RNA is bound by 10 proteins.  







eCLIP assay for TCTN3 is not avaliable on ENCORE database.





10 proteins are bound to TCTN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr109744707497447125-CDS,intron-Distal,intron-Proximal3.838776.98930HepG2U2AF2
chr109745310597453159-CDS,intron-Distal,intron-Proximal3.485233.64266HepG2PPIG
chr109742403797424101-CDS,intron-Distal4.360727.88423HepG2SF3A3
chr109744531397445378-CDS,intron-Distal3.354184.31744K562YBX3
chr109744676297446813-CDS,intron-Distal,intron-Proximal5.979905.01842HepG2PRPF8
chr109745341197453593-CDS,intron-Distal4.552409.57990HepG2RPS3
chr109745348897453654-CDS,intron-Distal4.356529.66125HepG2DDX3X
chr109744434297444393-CDS,intron-Distal,intron-Proximal4.869744.20763HepG2U2AF2
chr109742830797428391-intron-Distal3.827756.73852HepG2SUGP2
chr109745042097450564-intron-Distal3.187915.25804HepG2HNRNPL
chr109743454397434638-intron-Distal4.104895.29549HepG2HNRNPL
chr109745056497450627-intron-Distal3.712264.77135HepG2HNRNPL
chr109745179597451894-intron-Distal4.017196.78885HepG2QKI
chr109742766597427721-intron-Distal4.214504.61447HepG2SUGP2
chr109742725897427350-intron-Distal4.554296.07481HepG2SUGP2
chr109743476097434848-intron-Distal3.167303.33412HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TCTN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TCTN3 is not available on ENCORE database.

  • 63 RBPs can affect the levels of TCTN3.  








The Knockdown/knockout RNA-Seq assay for TCTN3 is not available on ENCORE database.





63 RBPs can affect the gene expression of TCTN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TCTN3ENSG00000119977.16919.373901251.91010-0.445403.068002.07450HepG2ABCF1
TCTN3ENSG00000119977.16829.069401150.81320-0.473107.348006.45450HepG2ACO1
TCTN3ENSG00000119977.16399.222001082.45670-1.4390026.9034024.41420HepG2ADAR
TCTN3ENSG00000119977.162433.290001602.145900.602805.598004.87220HepG2AKAP1
TCTN3ENSG00000119977.16950.194701156.18420-0.283102.827402.05300HepG2AKAP8L
TCTN3ENSG00000119977.161220.42870817.439900.578106.196905.34250HepG2BOP1
TCTN3ENSG00000119977.161687.178101259.437100.421703.500302.63700HepG2CIRBP
TCTN3ENSG00000119977.16657.44270899.63830-0.452502.048901.39630HepG2CNOT7
TCTN3ENSG00000119977.161315.604501691.80140-0.362804.706503.90810HepG2CELF1
TCTN3ENSG00000119977.16735.915001083.52630-0.558103.388001.97560HepG2DDX27
TCTN3ENSG00000119977.16938.248301101.00520-0.230801.902201.32420HepG2DKC1
TCTN3ENSG00000119977.16626.020201090.00410-0.8001014.6491013.13750HepG2DNAJC21
TCTN3ENSG00000119977.161164.75810900.502500.371102.384701.54080HepG2EIF3D
TCTN3ENSG00000119977.16844.106101363.68840-0.692005.287804.35760HepG2EIF4B
TCTN3ENSG00000119977.161144.159801719.16620-0.587406.856105.60110HepG2EIF4G2
TCTN3ENSG00000119977.161191.056701967.01690-0.7238018.7606017.42800HepG2ETF1
TCTN3ENSG00000119977.161194.23020784.008900.607007.297106.05850HepG2FUBP3
TCTN3ENSG00000119977.161859.794801413.208700.396103.080002.35010HepG2FXR1
TCTN3ENSG00000119977.161322.719501098.671000.267602.861601.86880HepG2HDGF
TCTN3ENSG00000119977.16776.260301224.02560-0.657007.686406.57760HepG2HNRNPC
TCTN3ENSG00000119977.161631.167401327.572500.297002.083201.47180HepG2HNRNPK
TCTN3ENSG00000119977.16900.774401657.06680-0.8794029.2566027.34780HepG2HNRNPL
TCTN3ENSG00000119977.16934.182501215.93440-0.380304.877904.09220HepG2HNRNPU
TCTN3ENSG00000119977.161908.906401421.589700.425103.090302.42680HepG2MATR3
TCTN3ENSG00000119977.161951.193701455.055500.423203.310002.61980HepG2NCBP2
TCTN3ENSG00000119977.161421.615101803.82090-0.343503.866402.96480HepG2NOL12
TCTN3ENSG00000119977.16564.54800719.84840-0.350601.970801.33460HepG2NSUN2
TCTN3ENSG00000119977.16549.77470822.17570-0.580602.825601.92570HepG2PABPC1
TCTN3ENSG00000119977.161746.894401338.782800.383805.738904.91540HepG2PCBP1
TCTN3ENSG00000119977.161572.278801827.87580-0.217302.836602.23770HepG2PUM1
TCTN3ENSG00000119977.161534.585301826.54140-0.251302.177201.57910HepG2PUM2
TCTN3ENSG00000119977.161047.650901475.38170-0.493906.685405.77630HepG2QKI
TCTN3ENSG00000119977.16492.177901318.42330-1.4216013.7417012.27890HepG2RAVER1
TCTN3ENSG00000119977.161225.269801644.05960-0.424205.642504.96910HepG2RBM22
TCTN3ENSG00000119977.161152.624401516.06120-0.395405.431004.71340HepG2NELFE
TCTN3ENSG00000119977.16841.130001285.63760-0.612107.552606.50690HepG2RPLP0
TCTN3ENSG00000119977.16922.569101295.17710-0.489402.692201.76100HepG2RPS10
TCTN3ENSG00000119977.16641.12950876.28850-0.450803.887103.16940HepG2RPS19
TCTN3ENSG00000119977.16449.50330883.74750-0.9753010.006308.64760HepG2RRP9
TCTN3ENSG00000119977.16721.933701082.85350-0.5849010.234109.11570HepG2SAFB2
TCTN3ENSG00000119977.16653.023001106.98550-0.761406.142905.11460HepG2SF3A3
TCTN3ENSG00000119977.16578.93330803.55600-0.473003.499802.71540HepG2SF3B1
TCTN3ENSG00000119977.161231.237701418.30360-0.204101.832001.33410HepG2SF3B4
TCTN3ENSG00000119977.16571.487501344.53810-1.2343015.3823013.07910HepG2SMNDC1
TCTN3ENSG00000119977.161297.14010894.097300.536703.123202.29200HepG2SNRNP70
TCTN3ENSG00000119977.161135.707501856.90030-0.7093018.2362017.24980HepG2SRFBP1
TCTN3ENSG00000119977.161716.428701480.388700.213302.077301.65140HepG2SRSF1
TCTN3ENSG00000119977.16924.292801172.43340-0.343104.285003.44730HepG2SRSF7
TCTN3ENSG00000119977.16980.948901204.36370-0.296003.327502.73380HepG2SRSF9
TCTN3ENSG00000119977.161572.391301933.51500-0.298304.515803.75660HepG2SUCLG1
TCTN3ENSG00000119977.16607.36760853.64510-0.491104.257003.10220HepG2SUPT6H
TCTN3ENSG00000119977.16554.147201152.77650-1.0568012.6793011.40890HepG2SUPV3L1
TCTN3ENSG00000119977.161030.71980791.291800.381302.755902.03260HepG2TARDBP
TCTN3ENSG00000119977.161502.64180981.999400.613602.586201.55130HepG2TBRG4
TCTN3ENSG00000119977.16660.032001081.41380-0.712307.396906.37570HepG2U2AF1
TCTN3ENSG00000119977.161058.216501780.60750-0.750708.334306.85070HepG2UBE2L3
TCTN3ENSG00000119977.16522.04220680.99920-0.383502.165601.49380HepG2UCHL5
TCTN3ENSG00000119977.161271.20040947.819500.423406.074805.24640HepG2UTP3
TCTN3ENSG00000119977.16848.818301133.27100-0.417005.957805.03130HepG2ZC3H8
TCTN3ENSG00000119977.16813.618701079.71210-0.408205.864705.14650HepG2ZNF622
TCTN3ENSG00000119977.16495.19190746.21040-0.591604.960104.21560K562AQR
TCTN3ENSG00000119977.16562.62840366.795500.617106.063405.21930K562FXR1
TCTN3ENSG00000119977.16290.90180411.40600-0.500002.957902.13740K562GPKOW
TCTN3ENSG00000119977.16254.71030403.63270-0.664204.612303.86020K562HNRNPC
TCTN3ENSG00000119977.16481.08960582.87090-0.276902.020301.37060K562NSUN2
TCTN3ENSG00000119977.16359.79520575.10430-0.676607.523006.23040K562SF3A3
TCTN3ENSG00000119977.16275.57850391.38340-0.506102.461901.54790K562SF3B1
TCTN3ENSG00000119977.16259.21790382.38210-0.560804.016602.97820K562SF3B4
TCTN3ENSG00000119977.16317.10900425.55150-0.424402.471501.79680K562SRSF1
TCTN3ENSG00000119977.16316.75870430.70330-0.443302.470901.80040K562TARDBP
TCTN3ENSG00000119977.16296.49080453.44220-0.612903.598901.55190K562TRNAU1AP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TCTN3 is not available on ENCORE database.





4 RBPs can affect the splicing of TCTN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETCTN3ENSG00000119977.16chr10-9742880397428914974231579742405797440228974403660.053000.002640.04553includedHepG2U2AF1
SETCTN3ENSG00000119977.16chr10-9742880397428914974231579742405797440228974403660.119000.000050.00108includedHepG2U2AF2
SETCTN3ENSG00000119977.16chr10-974453129744539397444255974443819744625197446287-0.101000.000470.09645excludedHepG2NOL12
SETCTN3ENSG00000119977.16chr10-974424079744256197440228974403669744285797442937-0.173000.004150.06013excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TCTN3 is not avaliable on ENCORE database.