TATDN3

General Information

Gene Name : TATDN3
Gene ID : ENSG00000203705.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TATDN3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TATDN3	ENSG00000203705.10	12.77	12.08	12.43	ENCSR000AEF
HepG2	TATDN3	ENSG00000203705.10	2.61	4.04	3.33	ENCSR985KAT
K562	TATDN3	ENSG00000203705.10	16.47	18.03	17.25	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TATDN3 is not avaliable on ENCORE database.

Proteins bound to RNA

TATDN3 RNA is bound by 7 proteins.

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eCLIP assay for TATDN3 is not avaliable on ENCORE database.

7 proteins are bound to TATDN3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	212965246	212965330	+	5'-UTR,CDS,intron-Proximal	4.21857	9.45490	K562	DDX3X
chr1	212976063	212976107	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.64795	6.63777	K562	LIN28B
chr1	212989537	212989603	+	3'-UTR	3.37141	6.48866	K562	UPF1
chr1	212981042	212981124	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.75737	5.83621	K562	AQR
chr1	212977661	212977718	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.42222	5.20653	K562	LIN28B
chr1	212973995	212974082	+	intron-Distal	3.81708	4.69074	K562	PTBP1
chr1	212989192	212989228	+	3'-UTR	4.28645	3.69433	K562	UPF1
chr1	212986776	212986869	+	intron-Distal	3.60785	3.06150	K562	KHSRP
chr1	212968422	212968472	+	CDS,intron-Proximal	3.22426	3.01994	K562	BUD13
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 9 of 9 entries

eCLIP assay for TATDN3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TATDN3 is not available on ENCORE database.
56 RBPs can affect the levels of TATDN3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TATDN3 is not available on ENCORE database.

56 RBPs can affect the gene expression of TATDN3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TATDN3	ENSG00000203705.6	377.59220	162.31010	1.21800	8.86910	7.97670	HepG2	AKAP1
TATDN3	ENSG00000203705.6	407.50190	726.44600	-0.83400	9.44800	7.60820	K562	PCBP2
TATDN3	ENSG00000203705.6	595.15300	957.62550	-0.68620	5.99000	5.22850	K562	PUS1
TATDN3	ENSG00000203705.6	1067.32990	1475.61150	-0.46730	6.47660	4.99220	K562	PUM2
TATDN3	ENSG00000203705.6	312.68310	188.65160	0.72890	5.59540	4.78980	HepG2	ETF1
TATDN3	ENSG00000203705.6	264.45120	133.56900	0.98530	5.37900	4.54400	HepG2	DDX6
TATDN3	ENSG00000203705.6	638.64590	927.80470	-0.53880	4.65030	3.94810	K562	AGGF1
TATDN3	ENSG00000203705.6	170.66870	75.64190	1.17380	4.75790	3.90750	HepG2	SUPV3L1
TATDN3	ENSG00000203705.6	987.49580	1297.72190	-0.39410	4.81560	3.59290	K562	EIF4G2
TATDN3	ENSG00000203705.6	525.57500	760.67150	-0.53340	4.63130	3.51140	K562	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 59 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TATDN3 is not available on ENCORE database.

5 RBPs can affect the splicing of TATDN3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	TATDN3	ENSG00000203705.6	chr1	+	212970435	212970538			212970453	212970538	212969858	212969932	0.12600	0.00000	0.00000	longer	K562	AQR
MXE	TATDN3	ENSG00000203705.6	chr1	+	212970435	212970538	212976042	212976105	212969858	212969932	212977661	212977771	0.10100	0.00000	0.00004	1included	K562	AQR
MXE	TATDN3	ENSG00000203705.6	chr1	+	212977880	212977993	212981009	212981190	212977661	212977771	212985589	212985670	0.10300	0.00024	0.00260	1included	K562	AQR
MXE	TATDN3	ENSG00000203705.6	chr1	+	212977880	212977993	212981077	212981190	212977661	212977771	212985589	212985670	0.10200	0.00026	0.00283	1included	K562	AQR
SE	TATDN3	ENSG00000203705.6	chr1	+	212966243	212966323			212965262	212965329	212968436	212968469	0.06400	0.00048	0.09625	included	K562	PPIL4
SE	TATDN3	ENSG00000203705.6	chr1	+	212977937	212977993			212977661	212977771	212981077	212981190	-0.08300	0.00117	0.02562	excluded	K562	U2AF1
MXE	TATDN3	ENSG00000203705.6	chr1	+	212977880	212977993	212981009	212981190	212977661	212977771	212985592	212985670	0.17600	0.00145	0.01259	1included	K562	AQR
MXE	TATDN3	ENSG00000203705.6	chr1	+	212977880	212977993	212981077	212981190	212977661	212977771	212985592	212985670	0.17200	0.00164	0.01402	1included	K562	AQR
SE	TATDN3	ENSG00000203705.6	chr1	+	212981077	212981190			212977937	212977993	212985592	212985670	-0.07300	0.00301	0.06400	excluded	K562	AGGF1
SE	TATDN3	ENSG00000203705.6	chr1	+	212977937	212977993			212977661	212977771	212981077	212981190	-0.06300	0.00391	0.05954	excluded	K562	U2AF2

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TATDN3

General Information

Functions

Localization

Domains (AlphaFold: TATDN3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TATDN3 is not avaliable on ENCORE database.

7 proteins are bound to TATDN3 RNA:

eCLIP assay for TATDN3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TATDN3 is not available on ENCORE database.

56 RBPs can affect the gene expression of TATDN3 :

The Knockdown/knockout RNA-Seq assay for TATDN3 is not available on ENCORE database.

5 RBPs can affect the splicing of TATDN3 :

The Knockdown/knockout RNA-Seq assay for TATDN3 is not avaliable on ENCORE database.