SUGT1

General Information

Gene Name : SUGT1
Gene ID : ENSG00000165416.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SUGT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SUGT1	ENSG00000165416.14	53.95	52.39	53.17	ENCSR000AEF
HepG2	SUGT1	ENSG00000165416.14	31.85	53.38	42.62	ENCSR985KAT
K562	SUGT1	ENSG00000165416.14	41.23	39.72	40.47	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SUGT1 is not avaliable on ENCORE database.

Proteins bound to RNA

SUGT1 RNA is bound by 10 proteins.

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eCLIP assay for SUGT1 is not avaliable on ENCORE database.

10 proteins are bound to SUGT1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	53226979	53227096	+	5'-UTR,CDS,intron-Proximal	3.60291	8.88978	K562	DDX3X
chr13	53227191	53227260	+	5'-UTR,CDS,intron-Proximal	4.04806	7.26133	HepG2	PRPF8
chr13	53261974	53262053	+	3'-UTR	3.77878	7.12499	K562	KHSRP
chr13	53236093	53236187	+	intron-Distal	4.88640	6.94732	K562	KHSRP
chr13	53254242	53254288	+	CDS	4.23872	6.65960	HepG2	BCLAF1
chr13	53261964	53262055	+	3'-UTR,CDS	4.54571	5.87902	HepG2	KHSRP
chr13	53227194	53227239	+	5'-UTR,CDS,intron-Proximal	3.43894	5.58370	HepG2	PPIG
chr13	53261995	53262035	+	3'-UTR	4.85151	5.45041	K562	PUM2
chr13	53261822	53261888	+	CDS,intron-Proximal	4.20071	4.69223	K562	SF3B4
chr13	53238116	53238182	+	CDS,intron-Proximal	4.89579	4.65563	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 16 entries

eCLIP assay for SUGT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SUGT1 is not available on ENCORE database.
65 RBPs can affect the levels of SUGT1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SUGT1 is not available on ENCORE database.

65 RBPs can affect the gene expression of SUGT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SUGT1	ENSG00000165416.10	2102.65340	1427.49670	0.55860	13.52130	12.63630	HepG2	SRFBP1
SUGT1	ENSG00000165416.10	1032.26030	657.33260	0.65100	12.18600	10.94300	HepG2	ZC3H8
SUGT1	ENSG00000165416.10	1922.78220	1263.87080	0.60520	11.46870	10.56680	HepG2	RBM22
SUGT1	ENSG00000165416.10	1545.45770	886.69290	0.80140	11.09920	9.81920	HepG2	U2AF1
SUGT1	ENSG00000165416.10	934.64160	1365.04440	-0.54650	10.54470	9.24270	HepG2	DAZAP1
SUGT1	ENSG00000165416.10	1811.00580	1181.49820	0.61610	9.79800	9.03110	HepG2	SRSF1
SUGT1	ENSG00000165416.10	1000.84980	666.09200	0.58730	9.06510	7.78160	HepG2	PRPF4
SUGT1	ENSG00000165416.10	2114.39460	1565.20950	0.43380	7.86390	6.84200	K562	DDX47
SUGT1	ENSG00000165416.10	899.24450	1239.07320	-0.46250	7.18870	6.14180	HepG2	SLBP
SUGT1	ENSG00000165416.10	604.64490	860.30080	-0.50880	6.70610	5.89560	HepG2	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 75 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SUGT1 is not available on ENCORE database.

16 RBPs can affect the splicing of SUGT1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SUGT1	ENSG00000165416.10	chr13	+	53227180	53227238	53226973	53227093	53231666	53231757	-0.29000	0.00000	0.00000	excluded	K562	SF3B4
SE	SUGT1	ENSG00000165416.10	chr13	+	53227180	53227238	53226973	53227093	53231666	53231757	-0.13000	0.00000	0.00000	excluded	HepG2	SF3A3
SE	SUGT1	ENSG00000165416.10	chr13	+	53235609	53235705	53233313	53233384	53236783	53236837	0.23900	0.00000	0.00013	included	HepG2	SUPV3L1
SE	SUGT1	ENSG00000165416.10	chr13	+	53232233	53232361	53231666	53231757	53232533	53232603	0.07500	0.00000	0.00037	included	HepG2	SF3B4
SE	SUGT1	ENSG00000165416.10	chr13	+	53227180	53227238	53226978	53227093	53231666	53231757	-0.20000	0.00000	0.00000	excluded	HepG2	SF3B4
SE	SUGT1	ENSG00000165416.10	chr13	+	53235609	53235705	53233313	53233384	53236783	53236837	0.62800	0.00000	0.00000	included	HepG2	HNRNPC
SE	SUGT1	ENSG00000165416.10	chr13	+	53235609	53235705	53233313	53233384	53236783	53236837	0.58900	0.00000	0.00003	included	K562	HNRNPC
SE	SUGT1	ENSG00000165416.10	chr13	+	53235609	53235705	53233313	53233384	53236783	53236837	-0.15200	0.00001	0.00017	excluded	K562	AQR
SE	SUGT1	ENSG00000165416.10	chr13	+	53227180	53227238	53226973	53227093	53231666	53231757	0.07000	0.00001	0.00106	included	K562	HNRNPU
SE	SUGT1	ENSG00000165416.10	chr13	+	53227180	53227238	53226973	53227093	53231666	53231757	-0.12800	0.00001	0.00094	excluded	K562	SF3B1

Showing 1 to 10 of 23 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SUGT1

General Information

Functions

Localization

Domains (AlphaFold: SUGT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SUGT1 is not avaliable on ENCORE database.

10 proteins are bound to SUGT1 RNA:

eCLIP assay for SUGT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SUGT1 is not available on ENCORE database.

65 RBPs can affect the gene expression of SUGT1 :

The Knockdown/knockout RNA-Seq assay for SUGT1 is not available on ENCORE database.

16 RBPs can affect the splicing of SUGT1 :

The Knockdown/knockout RNA-Seq assay for SUGT1 is not avaliable on ENCORE database.