SDCCAG3

General Information

Gene Name : SDCCAG3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SDCCAG3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SDCCAG3 is not avaliable on ENCORE database.

Proteins bound to RNA

SDCCAG3 RNA is bound by 24 proteins.

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eCLIP assay for SDCCAG3 is not avaliable on ENCORE database.

24 proteins are bound to SDCCAG3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	139297456	139297549	-	intron-Distal	6.17615	35.51077	HepG2	PCBP2
chr9	139297386	139297456	-	intron-Distal	6.95580	32.35049	HepG2	PCBP2
chr9	139297650	139297740	-	intron-Distal	4.91002	21.64954	HepG2	PCBP2
chr9	139297357	139297563	-	intron-Distal	4.62248	18.71844	HepG2	DDX59
chr9	139297668	139297816	-	intron-Distal	5.46278	15.36621	HepG2	DDX59
chr9	139297559	139297603	-	intron-Distal	6.05915	13.78241	HepG2	PCBP2
chr9	139297740	139297811	-	intron-Distal	6.17034	13.49443	HepG2	PCBP2
chr9	139299432	139299525	-	intron-Distal,intron-Proximal	3.57523	13.43650	K562	TIA1
chr9	139299242	139299327	-	intron-Distal,intron-Proximal	3.28152	12.56975	HepG2	RBFOX2
chr9	139304877	139304968	-	5'-UTR,intron-Distal	4.31153	12.55615	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 70 entries

eCLIP assay for SDCCAG3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SDCCAG3 is not available on ENCORE database.
90 RBPs can affect the levels of SDCCAG3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SDCCAG3 is not available on ENCORE database.

90 RBPs can affect the gene expression of SDCCAG3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SDCCAG3	ENSG00000165689.12	839.90680	1461.07280	-0.79870	20.36830	19.25570	HepG2	SSB
SDCCAG3	ENSG00000165689.12	1559.63520	918.67650	0.76350	18.92240	17.57150	HepG2	UTP3
SDCCAG3	ENSG00000165689.12	616.39660	1289.01000	-1.06430	16.44410	15.15960	K562	PUS1
SDCCAG3	ENSG00000165689.12	527.16480	863.29590	-0.71160	12.29040	11.15020	HepG2	PUS1
SDCCAG3	ENSG00000165689.12	538.44800	876.44430	-0.70290	12.27170	11.02580	HepG2	ZC3H8
SDCCAG3	ENSG00000165689.12	2952.50350	2102.88710	0.48950	10.96180	9.76300	K562	DDX47
SDCCAG3	ENSG00000165689.12	398.32640	781.79710	-0.97280	10.41550	9.24130	HepG2	SUPV3L1
SDCCAG3	ENSG00000165689.12	1197.63620	1682.87290	-0.49070	9.81330	9.02720	HepG2	SRFBP1
SDCCAG3	ENSG00000165689.12	1338.04980	900.56810	0.57110	8.99900	7.97980	K562	FXR1
SDCCAG3	ENSG00000165689.12	1125.13770	729.81580	0.62440	8.82280	7.40380	K562	EIF3G
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SDCCAG3 is not available on ENCORE database.

13 RBPs can affect the splicing of SDCCAG3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SDCCAG3	ENSG00000165689.12	chr9	-	139303450	139303519	139302277	139302390	139304541	139304691	-0.45400	0.00000	0.00000	excluded	K562	SRSF1
A3SS	SDCCAG3	ENSG00000165689.12	chr9	-	139300356	139300448	139300356	139300430	139301596	139302013	0.16900	0.00000	0.00000	longer	K562	AQR
SE	SDCCAG3	ENSG00000165689.12	chr9	-	139303450	139303519	139302277	139302390	139304541	139304691	-0.22100	0.00001	0.00034	excluded	K562	HNRNPC
SE	SDCCAG3	ENSG00000165689.12	chr9	-	139303450	139303519	139302277	139302390	139304541	139304691	-0.28600	0.00002	0.00122	excluded	K562	RBM15
SE	SDCCAG3	ENSG00000165689.12	chr9	-	139304541	139304691	139302277	139302390	139304779	139304979	0.27700	0.00007	0.00205	included	K562	HNRNPC
A3SS	SDCCAG3	ENSG00000165689.12	chr9	-	139300356	139300515	139300356	139300430	139301596	139302013	0.07200	0.00010	0.00402	longer	HepG2	U2AF2
A3SS	SDCCAG3	ENSG00000165689.12	chr9	-	139299542	139299706	139299542	139299654	139300356	139300430	0.05600	0.00042	0.00323	longer	K562	AQR
SE	SDCCAG3	ENSG00000165689.12	chr9	-	139303450	139303519	139302277	139302390	139304541	139304691	0.31900	0.00079	0.01646	included	K562	U2AF2
SE	SDCCAG3	ENSG00000165689.12	chr9	-	139304541	139304691	139302277	139302390	139304779	139304979	0.27200	0.00153	0.05492	included	K562	FXR1
RI	SDCCAG3	ENSG00000165689.12	chr9	-	139301468	139302013	139301468	139301679	139301805	139302013	0.08000	0.00161	0.01348	included	HepG2	U2AF2

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SDCCAG3

General Information

Functions

Localization

Domains (AlphaFold: SDCCAG3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SDCCAG3 is not avaliable on ENCORE database.

24 proteins are bound to SDCCAG3 RNA:

eCLIP assay for SDCCAG3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SDCCAG3 is not available on ENCORE database.

90 RBPs can affect the gene expression of SDCCAG3 :

The Knockdown/knockout RNA-Seq assay for SDCCAG3 is not available on ENCORE database.

13 RBPs can affect the splicing of SDCCAG3 :

The Knockdown/knockout RNA-Seq assay for SDCCAG3 is not avaliable on ENCORE database.