RP11-21J18.1

General Information

Gene Name : RP11-21J18.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-21J18.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-21J18.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-21J18.1 RNA is bound by 56 proteins.

CanvasJS.com

eCLIP assay for RP11-21J18.1 is not avaliable on ENCORE database.

56 proteins are bound to RP11-21J18.1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	9165305	9165356	+	intron-Distal	5.96239	59.92416	K562	EXOSC5
chr18	9229927	9229976	+	intron-Distal	6.75654	51.81491	K562	EXOSC5
chr18	9126857	9126906	+	CDS,intron-Distal,intron-Proximal	4.15166	42.78550	K562	PABPC4
chr18	9124871	9124912	+	CDS,intron-Distal,intron-Proximal	4.23569	42.74403	K562	PABPC4
chr18	9164692	9164736	+	intron-Distal	7.36322	39.56674	K562	EXOSC5
chr18	9230009	9230055	+	intron-Distal	5.80009	39.00562	K562	EXOSC5
chr18	9104116	9104180	+	5'-UTR,intron-Distal	4.25680	38.10627	K562	U2AF2
chr18	9164874	9164932	+	intron-Distal	5.73316	37.67771	K562	EXOSC5
chr18	9232117	9232182	+	intron-Distal	5.64353	35.02585	K562	EXOSC5
chr18	9117834	9117894	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.30420	33.93791	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 309 entries

eCLIP assay for RP11-21J18.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-21J18.1 is not available on ENCORE database.
27 RBPs can affect the levels of RP11-21J18.1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RP11-21J18.1 is not available on ENCORE database.

27 RBPs can affect the gene expression of RP11-21J18.1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-21J18.1	ENSG00000265257.1	593.33240	0.00000	99999.99990	142.63480	138.28260	K562	U2AF1
RP11-21J18.1	ENSG00000265257.1	507.00040	0.00000	99999.99990	113.97580	109.62170	HepG2	SERBP1
RP11-21J18.1	ENSG00000265257.1	890.88990	32.15260	4.79210	43.31490	38.92070	K562	PPIL4
RP11-21J18.1	ENSG00000265257.1	117.96590	0.00000	99999.99990	25.38070	23.71280	HepG2	SUPV3L1
RP11-21J18.1	ENSG00000265257.1	153.85200	0.00000	99999.99990	22.87720	21.37990	HepG2	RPS19
RP11-21J18.1	ENSG00000265257.1	1159.77430	0.00000	99999.99990	22.86720	18.51410	K562	TAF15
RP11-21J18.1	ENSG00000265257.1	53.41720	0.00000	99999.99990	17.37730	14.33200	K562	EXOSC5
RP11-21J18.1	ENSG00000265257.1	67.15750	264.88600	-1.97980	15.53840	14.15860	HepG2	ZC3H8
RP11-21J18.1	ENSG00000265257.1	147.35810	0.00000	99999.99990	13.12120	11.28040	HepG2	TFIP11
RP11-21J18.1	ENSG00000265257.1	340.06840	0.00000	99999.99990	13.62590	11.08160	HepG2	NONO
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-21J18.1 is not available on ENCORE database.

6 RBPs can affect the splicing of RP11-21J18.1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9103089	9103322			9102733	9102795	9117835	9117901	0.06700	0.00000	0.00000	included	K562	AQR
SE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9119323	9119386			9117835	9117901	9119471	9119588	-0.07800	0.00000	0.00000	excluded	K562	AQR
SE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9124919	9124981			9122458	9122679	9126828	9126905	-0.05200	0.00000	0.00000	excluded	K562	AQR
SE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9119328	9119386			9117835	9117901	9119471	9119588	-0.07300	0.00000	0.00000	excluded	K562	U2AF1
MXE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9119471	9119588	9122510	9122679	9117835	9117901	9124871	9124981	0.05500	0.00000	0.00000	1included	K562	AQR
MXE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9119471	9119588	9126828	9126905	9117835	9117901	9134183	9134290	0.21100	0.00000	0.00000	1included	K562	AQR
MXE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9117795	9117901	9119323	9119386	9102733	9102795	9119471	9119588	0.10100	0.00000	0.00000	1included	K562	AQR
MXE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9124871	9124981	9126828	9126905	9122510	9122679	9134183	9134290	0.10500	0.00000	0.00001	1included	HepG2	DDX55
MXE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9124850	9124981	9126828	9126905	9122510	9122679	9134183	9134290	0.14700	0.00000	0.00000	1included	HepG2	U2AF2
MXE	RP11-21J18.1	ENSG00000265257.1	chr18	+	9124850	9124981	9126828	9126905	9122510	9122679	9134183	9134290	0.15300	0.00001	0.00038	1included	HepG2	U2AF1

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-21J18.1

General Information

Functions

Localization

Domains (AlphaFold: RP11-21J18.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-21J18.1 is not avaliable on ENCORE database.

56 proteins are bound to RP11-21J18.1 RNA:

eCLIP assay for RP11-21J18.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-21J18.1 is not available on ENCORE database.

27 RBPs can affect the gene expression of RP11-21J18.1 :

The Knockdown/knockout RNA-Seq assay for RP11-21J18.1 is not available on ENCORE database.

6 RBPs can affect the splicing of RP11-21J18.1 :

The Knockdown/knockout RNA-Seq assay for RP11-21J18.1 is not avaliable on ENCORE database.