RNF41

General Information

Gene Name       : RNF41
Gene ID             : ENSG00000181852.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF41)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF41ENSG00000181852.1717.4022.6120.00ENCSR000AEF
HepG2RNF41ENSG00000181852.1726.1217.7321.93ENCSR985KAT
K562RNF41ENSG00000181852.1738.4131.4634.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RNF41Ribo-STAMP-293TshRNARNF41-BGRSLV04-53,RNF41-BGRSLV04-54NT-BGRSLV04-1,NT-BGRSLV04-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF41 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF41 RNA is bound by 9 proteins.  







eCLIP assay for RNF41 is not avaliable on ENCORE database.





9 proteins are bound to RNF41 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125659969656599754-3'-UTR,intron-Distal4.934485.64948HepG2UPF1
chr125660421256604330-3'-UTR,CDS,intron-Distal4.149364.50960HepG2GRWD1
chr125659929056599343-3'-UTR,intron-Distal5.387637.86563K562TIA1
chr125659968456599758-3'-UTR,intron-Distal3.950289.00887K562UPF1
chr125659901256599152-3'-UTR,intron-Distal,intron-Proximal5.3007415.14095K562FAM120A
chr125659839256598486-3'-UTR,intron-Distal5.415748.60492HepG2PCBP2
chr125660041256600463-3'-UTR,CDS,intron-Distal,intron-Proximal3.492634.91258K562YBX3
chr125659967856599752-3'-UTR,intron-Distal3.874649.98236K562FAM120A
chr125660051256600516-3'-UTR,CDS,intron-Distal,intron-Proximal4.1928318.86426K562YBX3
chr125660141656601507-3'-UTR,CDS,intron-Distal,intron-Proximal3.305323.61259K562ZNF622
chr125659930356599337-3'-UTR,intron-Distal4.396593.81568K562FAM120A
chr125660051656600553-3'-UTR,CDS,intron-Distal,intron-Proximal4.2979918.08646K562YBX3
chr125660428856604341-3'-UTR,CDS,intron-Distal4.872708.23960K562YBX3
chr125661559956615678-5'-UTR,intron-Distal,intron-Proximal3.856154.62831HepG2PCBP2
chr125661554356615653-5'-UTR,intron-Distal,intron-Proximal4.766236.05264HepG2DDX3X
chr125661030756610398-5'-UTR,intron-Distal,intron-Proximal5.285206.69401K562DDX3X
chr125660395556604056-intron-Distal,intron-Proximal4.601964.35676HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF41 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF41 is not available on ENCORE database.

  • 58 RBPs can affect the levels of RNF41.  








The Knockdown/knockout RNA-Seq assay for RNF41 is not available on ENCORE database.





58 RBPs can affect the gene expression of RNF41 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF41ENSG00000181852.13438.90500695.81380-0.664805.305804.23500HepG2ASCC1
RNF41ENSG00000181852.13658.86280908.19390-0.463005.628604.70890HepG2AUH
RNF41ENSG00000181852.13275.00320420.91850-0.614104.450903.50130HepG2CALR
RNF41ENSG00000181852.13516.56980418.885600.302302.233701.47850HepG2DDX19B
RNF41ENSG00000181852.13633.88990449.679900.495203.699502.92410HepG2DDX21
RNF41ENSG00000181852.13321.14840496.31820-0.628002.614401.66630HepG2DDX59
RNF41ENSG00000181852.13399.05800665.25660-0.737306.040105.18250HepG2EIF2S1
RNF41ENSG00000181852.13571.956001042.76470-0.8664016.8488015.57030HepG2ETF1
RNF41ENSG00000181852.13249.16960437.79310-0.813102.778801.76050HepG2FTO
RNF41ENSG00000181852.13365.98530688.08650-0.910808.762907.61470HepG2G3BP1
RNF41ENSG00000181852.13441.26780730.37010-0.727006.467505.09670HepG2G3BP2
RNF41ENSG00000181852.13358.89550472.84330-0.397801.943201.40720HepG2HNRNPLL
RNF41ENSG00000181852.13330.70080511.39830-0.628906.522205.62440HepG2HNRNPU
RNF41ENSG00000181852.13498.30070703.47320-0.497502.614001.64270HepG2KHSRP
RNF41ENSG00000181852.13486.19210671.70810-0.466303.803002.90780HepG2NOL12
RNF41ENSG00000181852.13304.09000474.55940-0.642102.725301.64050HepG2NONO
RNF41ENSG00000181852.13567.79840754.20780-0.409604.213703.49220HepG2PCBP1
RNF41ENSG00000181852.13543.45320680.22450-0.323901.916301.35190HepG2PUM2
RNF41ENSG00000181852.13469.19520754.32790-0.685007.550206.48320HepG2RBM25
RNF41ENSG00000181852.13659.77070854.07080-0.372403.585702.98610HepG2NELFE
RNF41ENSG00000181852.13599.89340795.39600-0.407004.109903.37770HepG2RECQL
RNF41ENSG00000181852.13258.59270394.37840-0.608903.161202.32840HepG2RRP9
RNF41ENSG00000181852.13302.71320520.76930-0.782704.313703.32930HepG2SNRNP70
RNF41ENSG00000181852.13322.73940854.64350-1.4050036.1856034.82020HepG2SSB
RNF41ENSG00000181852.13918.37070720.059900.350904.229303.48940HepG2SUCLG1
RNF41ENSG00000181852.13299.12110662.45550-1.1471011.143908.52190HepG2SUGP2
RNF41ENSG00000181852.13137.97820514.47550-1.8987023.0531021.44360HepG2SUPV3L1
RNF41ENSG00000181852.13430.50920749.54290-0.8000011.7627010.73210HepG2TAF15
RNF41ENSG00000181852.13193.23660303.91760-0.653303.619002.75330HepG2UCHL5
RNF41ENSG00000181852.13365.04690452.83300-0.310901.968801.36310HepG2UPF1
RNF41ENSG00000181852.13623.09100437.196500.511105.077704.30770HepG2UTP3
RNF41ENSG00000181852.13376.66380506.44470-0.427102.114601.47310HepG2XRN2
RNF41ENSG00000181852.13288.47530563.93290-0.9671010.461209.29550HepG2ZC3H8
RNF41ENSG00000181852.13982.231301464.20910-0.5760010.623909.60690K562AGGF1
RNF41ENSG00000181852.13770.234901523.55000-0.9841017.9146015.96830K562AKAP8L
RNF41ENSG00000181852.131144.394601598.52180-0.482207.180105.61530K562ATP5C1
RNF41ENSG00000181852.131399.621301749.89440-0.322203.409102.08040K562CCDC124
RNF41ENSG00000181852.131328.085501717.91610-0.371303.262001.66650K562DDX19B
RNF41ENSG00000181852.131407.610301639.61150-0.220102.146701.38610K562DKC1
RNF41ENSG00000181852.131067.52380819.401100.381504.051003.20560K562EIF2S2
RNF41ENSG00000181852.13447.02980641.70340-0.521504.968703.91820K562EIF3G
RNF41ENSG00000181852.13776.18330617.335200.330202.136701.41120K562EIF4A3
RNF41ENSG00000181852.13700.70290555.940700.333802.570001.47150K562EIF4B
RNF41ENSG00000181852.13614.289101042.40510-0.762903.679202.20450K562HNRNPA2B1
RNF41ENSG00000181852.13811.044401014.44760-0.322802.873101.96300K562HNRNPU
RNF41ENSG00000181852.131687.36570939.345900.8449012.8475011.17140K562HSPD1
RNF41ENSG00000181852.13874.170001616.95820-0.8873010.469908.58100K562KIF1C
RNF41ENSG00000181852.13671.723201406.53800-1.0662017.9770015.36790K562MSI2
RNF41ENSG00000181852.13582.88660745.47140-0.354903.172402.30730K562MTPAP
RNF41ENSG00000181852.13682.495901269.64450-0.895508.594706.69430K562NAA15
RNF41ENSG00000181852.131052.909001443.29800-0.455004.005702.19330K562NOL12
RNF41ENSG00000181852.13594.95310911.88780-0.616102.516101.58380K562PABPN1
RNF41ENSG00000181852.13555.67830743.29130-0.419703.039002.01380K562PCBP2
RNF41ENSG00000181852.13546.26720832.16050-0.607304.897203.79330K562PCBP3
RNF41ENSG00000181852.13415.63190638.30510-0.618905.861404.69920K562POLR2G
RNF41ENSG00000181852.131193.103701500.47770-0.330703.252402.21230K562PUM2
RNF41ENSG00000181852.13608.979101511.12910-1.3112026.0251024.35710K562PUS1
RNF41ENSG00000181852.13635.429601472.21390-1.2122032.5880030.46360K562RBM15
RNF41ENSG00000181852.13633.20990818.91880-0.371002.399401.39580K562NELFE
RNF41ENSG00000181852.13476.76090631.98800-0.406603.873902.01590K562RPS10
RNF41ENSG00000181852.13792.72740589.254000.427803.221601.48870K562SND1
RNF41ENSG00000181852.13603.665701174.91110-0.960703.921801.58160K562SUGP2
RNF41ENSG00000181852.13319.27960560.44150-0.811706.563804.95190K562SUPV3L1
RNF41ENSG00000181852.131074.22830878.248600.290502.806902.08390K562UPF1
RNF41ENSG00000181852.13992.435801531.93980-0.626303.053901.66920K562UTP18
RNF41ENSG00000181852.13623.69730781.46220-0.325303.100902.20720K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF41 is not available on ENCORE database.





4 RBPs can affect the splicing of RNF41 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF41ENSG00000181852.13chr12-5660677956606922566040315660435256607741566078020.549000.000000.00000includedHepG2U2AF1
SERNF41ENSG00000181852.13chr12-5660677956606922566040315660435256607741566078020.181000.000180.01632includedHepG2AKAP1
SERNF41ENSG00000181852.13chr12-5660677956606922566040315660435256607741566078020.433000.000000.00000includedK562U2AF1
SERNF41ENSG00000181852.13chr12-5660677956606922566040315660435256607741566078020.469000.000000.00000includedK562U2AF2
A3SSRNF41ENSG00000181852.13chr12-5660774156607895566077415660785456610212566103970.064000.000010.00006longerK562AQR
A3SSRNF41ENSG00000181852.13chr12-5660194656602182566019465660208256604080566043520.192000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF41 is not avaliable on ENCORE database.