RAB3A

General Information

Gene Name       : RAB3A
Gene ID             : ENSG00000105649.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB3A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB3AENSG00000105649.90.340.760.55ENCSR000AEF
HepG2RAB3AENSG00000105649.93.351.502.42ENCSR985KAT
K562RAB3AENSG00000105649.92.011.271.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB3A is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB3A RNA is bound by 3 proteins.  







eCLIP assay for RAB3A is not avaliable on ENCORE database.





3 proteins are bound to RAB3A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191830819718308298-3'-UTR,CDS,intron-Distal4.782006.97460K562PCBP1
chr191830819218308269-3'-UTR,intron-Distal5.154846.97910HepG2PCBP2
chr191830801618308093-3'-UTR,intron-Distal5.5974321.42262K562PUM2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB3A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB3A is not available on ENCORE database.

  • 53 RBPs can affect the levels of RAB3A.  








The Knockdown/knockout RNA-Seq assay for RAB3A is not available on ENCORE database.





53 RBPs can affect the gene expression of RAB3A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB3AENSG00000105649.534.7304070.77050-1.027002.901902.28160HepG2ACO1
RAB3AENSG00000105649.537.0877084.20370-1.182903.456002.79580HepG2BOP1
RAB3AENSG00000105649.540.2335070.75080-0.814302.063201.47750HepG2CKAP4
RAB3AENSG00000105649.5103.4603058.853800.813802.062601.52250HepG2DDX6
RAB3AENSG00000105649.516.3266067.70710-2.052106.598705.63750HepG2DKC1
RAB3AENSG00000105649.532.0638062.47610-0.962402.083401.52620HepG2EIF4A3
RAB3AENSG00000105649.548.8132095.44170-0.967303.370802.71700HepG2ETF1
RAB3AENSG00000105649.534.2418069.15160-1.014002.608201.79690HepG2EWSR1
RAB3AENSG00000105649.543.0475094.45300-1.133702.746301.98000HepG2FIP1L1
RAB3AENSG00000105649.525.5058059.81060-1.229602.532401.58180HepG2KHSRP
RAB3AENSG00000105649.517.9510063.10290-1.813604.820903.96270HepG2MAGOH
RAB3AENSG00000105649.535.3650076.37430-1.110802.810501.99570HepG2MSI2
RAB3AENSG00000105649.5112.9935064.937400.799002.269501.69360HepG2NCBP2
RAB3AENSG00000105649.535.3038074.14790-1.070602.298001.61410HepG2NSUN2
RAB3AENSG00000105649.510.9141037.06680-1.763903.009701.34970HepG2PA2G4
RAB3AENSG00000105649.513.8231035.38640-1.356102.011601.31950HepG2PRPF8
RAB3AENSG00000105649.530.0324062.82590-1.064802.258501.71170HepG2PUF60
RAB3AENSG00000105649.5100.2243047.885701.065503.523002.82960HepG2QKI
RAB3AENSG00000105649.577.71020125.27160-0.688902.316101.52300HepG2RBM15
RAB3AENSG00000105649.529.5603057.01460-0.947702.090601.48720HepG2RPLP0
RAB3AENSG00000105649.554.1107096.45220-0.833902.095901.50780HepG2SF3A3
RAB3AENSG00000105649.580.4389032.354801.313802.554401.31370HepG2SNRNP200
RAB3AENSG00000105649.547.0039092.08610-0.970202.275701.57010HepG2SNRNP70
RAB3AENSG00000105649.553.4096090.09570-0.754402.133301.67530HepG2SRFBP1
RAB3AENSG00000105649.546.7335078.22080-0.743101.931801.48350HepG2SSB
RAB3AENSG00000105649.516.8735045.68020-1.436802.581901.92580HepG2SUPV3L1
RAB3AENSG00000105649.5129.9424081.521100.672502.050001.41400HepG2TARDBP
RAB3AENSG00000105649.539.2264082.58420-1.074003.265302.62430HepG2UTP3
RAB3AENSG00000105649.542.7391085.50360-1.000402.578101.44510K562AARS
RAB3AENSG00000105649.5312.4913079.720001.9707026.0688024.43980K562AGGF1
RAB3AENSG00000105649.5238.3851082.957601.5227013.3492011.75320K562AKAP8L
RAB3AENSG00000105649.5129.6239087.052500.574302.104801.31580K562ATP5C1
RAB3AENSG00000105649.583.6534044.229900.919302.324601.37200K562CSTF2
RAB3AENSG00000105649.571.44960181.72420-1.346809.453608.33470K562DDX47
RAB3AENSG00000105649.5139.4099071.860300.956003.560002.02220K562DHX30
RAB3AENSG00000105649.5176.0132089.234900.979905.358104.08670K562DKC1
RAB3AENSG00000105649.532.1120072.56730-1.176203.515802.71990K562EIF2S2
RAB3AENSG00000105649.519.3698065.28110-1.752903.887102.67180K562EIF3A
RAB3AENSG00000105649.551.99420101.96010-0.971603.239102.35410K562EIF4A3
RAB3AENSG00000105649.5133.1515057.838101.202905.824103.94690K562EXOSC5
RAB3AENSG00000105649.531.94880106.03550-1.730707.778706.83200K562FXR1
RAB3AENSG00000105649.53.8575028.22570-2.871303.500802.68620K562G3BP2
RAB3AENSG00000105649.5193.9999081.820401.245403.778502.27800K562HNRNPA2B1
RAB3AENSG00000105649.541.0807093.44520-1.185703.760203.07700K562HNRNPC
RAB3AENSG00000105649.548.21110101.51660-1.074302.118201.41890K562HSPD1
RAB3AENSG00000105649.5165.8607088.020100.914004.577903.47380K562KIF1C
RAB3AENSG00000105649.5197.1598098.607300.999505.849404.43840K562MBNL1
RAB3AENSG00000105649.5165.2335069.118201.257305.911504.44560K562NAA15
RAB3AENSG00000105649.5187.1937071.496901.388502.349001.45170K562PABPN1
RAB3AENSG00000105649.520.3732056.42010-1.469502.582901.81260K562POLR2G
RAB3AENSG00000105649.518.0626056.66010-1.649302.576401.85210K562PRPF8
RAB3AENSG00000105649.511.8069040.80970-1.789303.915503.13850K562PTBP1
RAB3AENSG00000105649.568.61370152.89090-1.155902.767301.95130K562PUF60
RAB3AENSG00000105649.5286.2170082.233101.799207.323706.48690K562PUS1
RAB3AENSG00000105649.5219.4276080.155301.4528012.1542010.91430K562RBM15
RAB3AENSG00000105649.520.9657057.67820-1.460001.991601.30410K562RPS19
RAB3AENSG00000105649.531.2707067.23370-1.104402.186301.30590K562RPS3
RAB3AENSG00000105649.566.67270145.86420-1.129503.050402.07280K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB3A is not available on ENCORE database.





1 RBPs can affect the splicing of RAB3A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRAB3AENSG00000105649.5chr19-1830953418309713183095341830965918311136183112550.074000.017240.08407longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB3A is not avaliable on ENCORE database.