PRDM10

General Information

Gene Name : PRDM10
Gene ID : ENSG00000170325.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PRDM10)

Not Available

Antibody Validation

Thermo Fisher: PA5-82948

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRDM10	ENSG00000170325.14	2.72	2.97	2.85	ENCSR000AEF
HepG2	PRDM10	ENSG00000170325.14	3.66	4.32	3.99	ENCSR985KAT
K562	PRDM10	ENSG00000170325.14	3.53	4.51	4.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
PRDM10	ENCAB724MBJ	PA5-82948	UC2739260			Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
PRDM10	K562	CRISPR	BGKcLV17-39,BGKcLV17-40	BGKcLV17-1,BGKcLV17-2	NO CLEAR BAND ON THE POSITION,	NotSatisfied	ENCODE4
PRDM10	K562	CRISPR	BGKcLV48-45,BGKcLV48-46	BGKcLV48-1,BGKcLV48-2	0.0,0.0	Experimented	ENCORE2
PRDM10	HepG2	CRISPR	BGHcLV18-35,BGHcLV18-36	BGHcLV18-1,BGHcLV18-2		NotSatisfied	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
PRDM10	Product_ID: PA5-82948 Lot_ID: UC2739260 Source: Thermo Fisher Target Name: PRDM10-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRDM10 is not avaliable on ENCORE database.

Proteins bound to RNA

PRDM10 RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for PRDM10 is not avaliable on ENCORE database.

23 proteins are bound to PRDM10 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	129871915	129872048	-	intron-Distal	3.27175	19.81704	HepG2	NKRF
chr11	129844161	129844249	-	intron-Distal	6.25678	17.93673	HepG2	PTBP1
chr11	129871919	129872022	-	intron-Distal	4.48814	16.84344	HepG2	CSTF2T
chr11	129871724	129871800	-	intron-Distal	3.39449	12.63110	HepG2	CSTF2T
chr11	129871924	129872061	-	intron-Distal	4.22236	11.72703	HepG2	PRPF4
chr11	129871837	129871884	-	intron-Distal	4.54708	10.78166	HepG2	CSTF2T
chr11	129871819	129871837	-	intron-Distal	4.45936	10.30165	HepG2	CSTF2T
chr11	129871921	129871978	-	intron-Distal	3.87920	8.72354	HepG2	SFPQ
chr11	129871931	129872040	-	intron-Distal	3.81315	8.57849	HepG2	GTF2F1
chr11	129871800	129871819	-	intron-Distal	3.66474	8.50973	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 36 entries

eCLIP assay for PRDM10 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for PRDM10 is not available on ENCORE database.
60 RBPs can affect the levels of PRDM10.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PRDM10 is not available on ENCORE database.

60 RBPs can affect the gene expression of PRDM10 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRDM10	ENSG00000170325.10	280.51200	708.04910	-1.33580	19.31690	17.36150	K562	HSPD1
PRDM10	ENSG00000170325.10	425.71670	767.11850	-0.84960	14.17520	12.81440	K562	DDX47
PRDM10	ENSG00000170325.10	897.56980	551.78960	0.70180	11.38350	10.55490	HepG2	SRFBP1
PRDM10	ENSG00000170325.10	818.31670	406.52720	1.00920	11.77600	10.45270	HepG2	U2AF1
PRDM10	ENSG00000170325.10	311.64630	608.94160	-0.96640	11.12160	9.58040	K562	GRSF1
PRDM10	ENSG00000170325.10	911.97850	584.51560	0.64170	9.61640	8.60490	HepG2	ETF1
PRDM10	ENSG00000170325.10	890.21720	540.88400	0.71870	9.21230	8.15320	K562	RBM15
PRDM10	ENSG00000170325.10	243.00520	456.15360	-0.90850	9.10540	7.68590	K562	POLR2G
PRDM10	ENSG00000170325.10	900.09100	555.01990	0.69740	7.27240	6.43890	K562	PUS1
PRDM10	ENSG00000170325.10	870.06620	559.77330	0.63620	7.10140	6.01400	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 62 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRDM10

General Information

Functions

Localization

Domains (AlphaFold: PRDM10)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRDM10 is not avaliable on ENCORE database.

23 proteins are bound to PRDM10 RNA:

eCLIP assay for PRDM10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRDM10 is not available on ENCORE database.

60 RBPs can affect the gene expression of PRDM10 :

The Knockdown/knockout RNA-Seq assay for PRDM10 is not available on ENCORE database.

No RBPs affect the alternative splcing events of PRDM10 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for PRDM10 is not avaliable on ENCORE database.