PITHD1

General Information

Gene Name : PITHD1
Gene ID : ENSG00000057757.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PITHD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PITHD1	ENSG00000057757.9	44.12	43.80	43.96	ENCSR000AEF
HepG2	PITHD1	ENSG00000057757.9	27.65	36.42	32.03	ENCSR985KAT
K562	PITHD1	ENSG00000057757.9	96.21	93.15	94.68	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PITHD1 is not avaliable on ENCORE database.

Proteins bound to RNA

PITHD1 RNA is bound by 16 proteins.

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eCLIP assay for PITHD1 is not avaliable on ENCORE database.

16 proteins are bound to PITHD1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	24105207	24105271	+	intron-Proximal	6.44915	34.23192	K562	AQR
chr1	24105202	24105207	+	CDS,intron-Proximal	5.43659	23.89805	K562	AQR
chr1	24114432	24114477	+	3'-UTR	3.55305	19.42324	K562	YBX3
chr1	24106299	24106352	+	5'-UTR,intron-Proximal	6.64204	17.70754	K562	SF3B4
chr1	24114529	24114553	+	3'-UTR	5.98089	17.53859	K562	LIN28B
chr1	24114232	24114314	+	3'-UTR	3.34210	17.44144	K562	UPF1
chr1	24114553	24114605	+	3'-UTR	4.44816	16.04045	K562	LIN28B
chr1	24105929	24106024	+	5'-UTR,CDS,intron-Proximal	3.80809	14.18840	K562	EFTUD2
chr1	24112151	24112209	+	5'-UTR,CDS,intron-Proximal	4.58168	14.01882	K562	U2AF2
chr1	24104906	24105033	+	5'-UTR,CDS	4.00325	13.57302	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 39 entries

eCLIP assay for PITHD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PITHD1 is not available on ENCORE database.
80 RBPs can affect the levels of PITHD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PITHD1 is not available on ENCORE database.

80 RBPs can affect the gene expression of PITHD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PITHD1	ENSG00000057757.5	3927.52360	1905.25550	1.04350	30.30480	27.97550	K562	SRSF1
PITHD1	ENSG00000057757.5	6617.37750	3249.20390	1.02610	20.39990	18.97810	K562	AQR
PITHD1	ENSG00000057757.5	646.52410	309.46670	1.06280	17.84040	16.51630	HepG2	UTP3
PITHD1	ENSG00000057757.5	880.65810	380.51700	1.21050	16.31650	14.78920	HepG2	MAGOH
PITHD1	ENSG00000057757.5	730.39300	373.28880	0.96830	15.35100	14.42950	HepG2	SRSF1
PITHD1	ENSG00000057757.5	914.78680	1583.44560	-0.79160	15.07260	13.17580	K562	U2AF2
PITHD1	ENSG00000057757.5	882.06810	1659.79180	-0.91200	15.37470	12.74140	K562	TRIM56
PITHD1	ENSG00000057757.5	359.39430	636.66620	-0.82500	12.60030	11.20650	HepG2	DAZAP1
PITHD1	ENSG00000057757.5	3067.66870	2209.93760	0.47300	12.26310	10.63490	K562	WDR43
PITHD1	ENSG00000057757.5	3036.00780	1943.46410	0.64340	11.79710	10.48170	K562	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 99 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PITHD1 is not available on ENCORE database.

13 RBPs can affect the splicing of PITHD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PITHD1	ENSG00000057757.5	chr1	+	24112804	24112913	24112164	24112269	24113764	24114722	-0.47500	0.00000	excluded	HepG2	U2AF1
SE	PITHD1	ENSG00000057757.5	chr1	+	24112804	24112913	24112164	24112269	24113764	24114722	-0.42400	0.00000	excluded	HepG2	U2AF2
SE	PITHD1	ENSG00000057757.5	chr1	+	24105927	24105971	24104894	24105203	24106353	24106431	-0.21000	0.00000	excluded	K562	AQR
SE	PITHD1	ENSG00000057757.5	chr1	+	24112716	24112913	24112057	24112269	24113764	24114722	-0.05900	0.00005	excluded	K562	AQR
SE	PITHD1	ENSG00000057757.5	chr1	+	24112804	24112913	24112164	24112269	24113764	24114722	-0.05600	0.00000	excluded	K562	PUS1
SE	PITHD1	ENSG00000057757.5	chr1	+	24112804	24112913	24112164	24112269	24113764	24114722	-0.50400	0.00000	excluded	K562	U2AF1
SE	PITHD1	ENSG00000057757.5	chr1	+	24112804	24112913	24112164	24112269	24113764	24114722	-0.46900	0.00000	excluded	K562	U2AF2
SE	PITHD1	ENSG00000057757.5	chr1	+	24112804	24112913	24112164	24112269	24113764	24114722	-0.06700	0.00019	excluded	K562	TARDBP
SE	PITHD1	ENSG00000057757.5	chr1	+	24112804	24112913	24112164	24112269	24113764	24114722	-0.05300	0.00000	excluded	K562	RBM15
SE	PITHD1	ENSG00000057757.5	chr1	+	24105927	24105971	24104894	24105203	24106353	24106431	-0.14300	0.00000	excluded	K562	SF3B1

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PITHD1

General Information

Functions

Localization

Domains (AlphaFold: PITHD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PITHD1 is not avaliable on ENCORE database.

16 proteins are bound to PITHD1 RNA:

eCLIP assay for PITHD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PITHD1 is not available on ENCORE database.

80 RBPs can affect the gene expression of PITHD1 :

The Knockdown/knockout RNA-Seq assay for PITHD1 is not available on ENCORE database.

13 RBPs can affect the splicing of PITHD1 :

The Knockdown/knockout RNA-Seq assay for PITHD1 is not avaliable on ENCORE database.