LSM10

General Information

Gene Name       : LSM10
Gene ID             : ENSG00000181817.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LSM10)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LSM10ENSG00000181817.521.5446.2633.90ENCSR000AEF
HepG2LSM10ENSG00000181817.560.9935.2848.14ENCSR985KAT
K562LSM10ENSG00000181817.5110.6782.3296.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
LSM10293TshRNABG293LV05-29,BG293LV05-30BG293LV05-1,BG293LV05-2NotSatisfiedENCORE2
LSM10293TshRNALSM10-BG293LV05-31,LSM10-BG293LV05-32NT-BG293LV05-1,NT-BG293LV05-2,SubmittingENCORE2
LSM10293TshRNALSM10-BG293LV06-65B,LSM10-BG293LV06-66BNT-BG293LV06-1B,NT-BG293LV06-2B,SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LSM10 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LSM10 RNA is bound by 1 proteins.  







eCLIP assay for LSM10 is not avaliable on ENCORE database.





1 proteins are bound to LSM10 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13686337236863464-5'-UTR,intron-Distal5.0330113.46875K562DDX3X
chr13686338236863486-5'-UTR,intron-Distal,intron-Proximal4.190236.30673HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LSM10 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LSM10 is not available on ENCORE database.

  • 69 RBPs can affect the levels of LSM10.  








The Knockdown/knockout RNA-Seq assay for LSM10 is not available on ENCORE database.





69 RBPs can affect the gene expression of LSM10 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LSM10ENSG00000181817.5275.11710209.070800.396002.019601.48490HepG2ACO1
LSM10ENSG00000181817.5602.85330259.101101.2182011.5964010.58040HepG2AKAP1
LSM10ENSG00000181817.5289.07120186.997500.628302.865501.81040HepG2AKAP8
LSM10ENSG00000181817.5421.69620320.596200.395302.527801.86690HepG2AUH
LSM10ENSG00000181817.5523.55450257.926601.0213010.662809.58710HepG2BOP1
LSM10ENSG00000181817.5305.84180203.673900.586402.901402.10910HepG2CIRBP
LSM10ENSG00000181817.571.15440134.84060-0.922203.201901.70320HepG2CSTF2T
LSM10ENSG00000181817.5376.75040228.265400.722806.483405.57820HepG2CELF1
LSM10ENSG00000181817.5272.31410193.341500.494003.119802.23800HepG2DDX19B
LSM10ENSG00000181817.5470.68550248.178400.923307.322406.34970HepG2DDX3X
LSM10ENSG00000181817.5199.20590140.115300.507502.425001.80810HepG2DNAJC2
LSM10ENSG00000181817.5308.04650217.036300.505102.764301.59600HepG2EIF2S2
LSM10ENSG00000181817.5388.61270220.538700.817204.390303.53470HepG2EIF4B
LSM10ENSG00000181817.5166.54690104.169100.676902.277401.47200HepG2GEMIN5
LSM10ENSG00000181817.5220.69160136.325000.694902.905501.50040HepG2HNRNPA0
LSM10ENSG00000181817.5181.79420256.13570-0.494601.998701.45510HepG2HNRNPLL
LSM10ENSG00000181817.5212.47770157.700300.430001.873201.36510HepG2HNRNPU
LSM10ENSG00000181817.5359.15950215.468100.737104.629403.77650HepG2IGF2BP2
LSM10ENSG00000181817.5510.79250261.288000.967007.401506.03040HepG2LARP4
LSM10ENSG00000181817.5486.61830229.911401.081609.004307.91990HepG2MATR3
LSM10ENSG00000181817.5128.16460261.26520-1.027503.062402.03990HepG2MTPAP
LSM10ENSG00000181817.5369.18460235.317700.649603.559702.84510HepG2NCBP2
LSM10ENSG00000181817.5226.27380147.301200.619202.071101.31960HepG2PABPC1
LSM10ENSG00000181817.5331.91880241.534900.458502.551301.96240HepG2PCBP1
LSM10ENSG00000181817.5320.68080232.305000.465002.444201.87900HepG2PUF60
LSM10ENSG00000181817.5430.28620246.613400.802909.635608.66930HepG2PUM1
LSM10ENSG00000181817.5262.72510128.022501.037102.304301.65760HepG2RAVER1
LSM10ENSG00000181817.5532.02690307.671400.790008.369507.58170HepG2RBM22
LSM10ENSG00000181817.5230.22160113.889301.015305.823604.97040HepG2RPS19
LSM10ENSG00000181817.5194.36730140.439700.468701.983801.42330HepG2SAFB2
LSM10ENSG00000181817.5400.86080229.283800.805905.292304.34240HepG2SF3A3
LSM10ENSG00000181817.5265.78260130.997401.020605.312903.95880HepG2SMNDC1
LSM10ENSG00000181817.5127.58830282.08160-1.144606.109804.94100HepG2SNRNP70
LSM10ENSG00000181817.5169.56340301.68690-0.831205.105504.45040HepG2SSB
LSM10ENSG00000181817.5411.16360260.857700.656306.097905.24020HepG2SUCLG1
LSM10ENSG00000181817.5239.06130154.604900.628703.807103.16760HepG2TRIM56
LSM10ENSG00000181817.5201.53270134.126200.587302.248801.56410HepG2UCHL5
LSM10ENSG00000181817.5279.69950203.339500.459902.584001.90560HepG2UPF1
LSM10ENSG00000181817.5522.79490196.316501.4130023.8844022.38550HepG2UTP3
LSM10ENSG00000181817.5548.29340223.634701.2937024.6126023.38890HepG2ZNF622
LSM10ENSG00000181817.5780.30070574.064900.442704.553803.85790K562AGGF1
LSM10ENSG00000181817.5427.61670699.68490-0.710406.168505.35180K562AQR
LSM10ENSG00000181817.5767.770501059.03240-0.464004.748403.45980K562CELF1
LSM10ENSG00000181817.5915.85110617.203900.569306.136605.21940K562DDX47
LSM10ENSG00000181817.5826.61530626.412800.400003.752702.93740K562EIF2S2
LSM10ENSG00000181817.5336.31330197.532700.767605.428404.32740K562EIF3G
LSM10ENSG00000181817.5417.58390288.834900.531703.429202.51980K562EIF4A3
LSM10ENSG00000181817.5605.88310300.375701.0122014.6997013.41680K562FXR1
LSM10ENSG00000181817.554.24770158.76080-1.549208.172406.82710K562G3BP2
LSM10ENSG00000181817.51109.81640834.682100.410903.456502.61340K562GRSF1
LSM10ENSG00000181817.5295.69600451.26020-0.609804.341203.61050K562HNRNPC
LSM10ENSG00000181817.5649.69140339.189300.937609.117807.24520K562HNRNPM
LSM10ENSG00000181817.5924.13990559.050100.725007.961206.62880K562HSPD1
LSM10ENSG00000181817.5425.54780242.608400.810603.213802.07850K562IGF2BP2
LSM10ENSG00000181817.5320.16370518.64330-0.695903.242801.68690K562ILF2
LSM10ENSG00000181817.5405.43410254.638000.670903.140802.24370K562MAGOH
LSM10ENSG00000181817.5465.14020580.96500-0.320802.531401.81420K562NSUN2
LSM10ENSG00000181817.5352.29830597.56310-0.762306.063404.82630K562PCBP3
LSM10ENSG00000181817.5283.64560458.35660-0.692405.928904.76010K562POLR2G
LSM10ENSG00000181817.5732.30860468.135100.645406.003404.71570K562PPIG
LSM10ENSG00000181817.5491.47000247.421700.990008.272307.16480K562PTBP1
LSM10ENSG00000181817.5788.47270577.202600.449903.062002.44360K562RBM15
LSM10ENSG00000181817.5539.91730341.798300.659504.190903.18260K562RPS19
LSM10ENSG00000181817.5328.74150181.490000.857004.750503.39120K562RPS3
LSM10ENSG00000181817.5361.96460242.593300.577202.218401.57660K562SRSF1
LSM10ENSG00000181817.5268.14380175.186000.614002.889801.80800K562SRSF4
LSM10ENSG00000181817.5377.48930541.01870-0.519203.373401.85030K562SSRP1
LSM10ENSG00000181817.5606.67200459.736300.400002.860402.02600K562SYNCRIP
LSM10ENSG00000181817.572.41770155.83580-1.105604.106702.18650K562TAF15
LSM10ENSG00000181817.5242.42820389.16610-0.682804.254703.07400K562TIAL1
LSM10ENSG00000181817.5109.18760158.87280-0.541102.048301.35830K562U2AF2
LSM10ENSG00000181817.5368.11080527.10060-0.517903.939502.88870K562WDR3
LSM10ENSG00000181817.5561.26940788.28190-0.490004.233803.12760K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LSM10 is not available on ENCORE database.





1 RBPs can affect the splicing of LSM10 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSLSM10ENSG00000181817.5chr1-3685964936859781368596493685975436863367368634880.114000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LSM10 is not avaliable on ENCORE database.