FCHSD1

General Information

Gene Name : FCHSD1
Gene ID : ENSG00000197948.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FCHSD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FCHSD1	ENSG00000197948.10	2.00	6.08	4.04	ENCSR000AEF
HepG2	FCHSD1	ENSG00000197948.10	9.54	4.46	7.00	ENCSR985KAT
K562	FCHSD1	ENSG00000197948.10	14.91	9.16	12.04	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FCHSD1 is not avaliable on ENCORE database.

Proteins bound to RNA

FCHSD1 RNA is bound by 9 proteins.

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eCLIP assay for FCHSD1 is not avaliable on ENCORE database.

9 proteins are bound to FCHSD1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	141029367	141029456	-	CDS,intron-Distal,intron-Proximal	4.51285	8.52787	K562	AQR
chr5	141028788	141028876	-	CDS,intron-Distal,intron-Proximal	4.53178	8.09084	HepG2	PPIG
chr5	141023932	141024069	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.84562	8.08215	HepG2	EFTUD2
chr5	141025729	141025801	-	CDS,intron-Distal,intron-Proximal	5.27856	7.63570	K562	AQR
chr5	141025700	141025784	-	CDS,intron-Distal,intron-Proximal	4.27825	7.40437	K562	DDX24
chr5	141027054	141027120	-	CDS,intron-Distal,intron-Proximal	3.90715	7.16374	K562	AQR
chr5	141019297	141019349	-	3'-UTR,intron-Distal	4.54340	7.12356	K562	XRCC6
chr5	141026116	141026181	-	CDS,intron-Distal,intron-Proximal	5.11607	6.83960	K562	AQR
chr5	141024620	141024697	-	CDS,intron-Distal	4.05106	6.22817	K562	DDX24
chr5	141029064	141029131	-	CDS,intron-Distal,intron-Proximal	5.26633	6.22530	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 20 entries

eCLIP assay for FCHSD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FCHSD1 is not available on ENCORE database.
86 RBPs can affect the levels of FCHSD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FCHSD1 is not available on ENCORE database.

86 RBPs can affect the gene expression of FCHSD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FCHSD1	ENSG00000197948.6	1424.98800	572.07010	1.31660	45.58790	44.20110	HepG2	SRFBP1
FCHSD1	ENSG00000197948.6	1036.29020	544.26570	0.92890	14.17890	11.80510	K562	PSIP1
FCHSD1	ENSG00000197948.6	1124.17490	703.97130	0.67520	10.93790	9.65310	K562	EIF2S2
FCHSD1	ENSG00000197948.6	504.91170	295.99870	0.77030	8.61180	7.35960	HepG2	PPIL4
FCHSD1	ENSG00000197948.6	1455.79780	1011.98610	0.52450	8.39030	7.02950	K562	SF3A3
FCHSD1	ENSG00000197948.6	762.19680	484.74790	0.65280	7.95880	6.84730	HepG2	PUM2
FCHSD1	ENSG00000197948.6	314.43570	496.67960	-0.65960	6.85420	6.11590	HepG2	SSB
FCHSD1	ENSG00000197948.6	662.54790	370.89030	0.83690	6.92130	5.97940	HepG2	DDX6
FCHSD1	ENSG00000197948.6	889.40870	606.00480	0.55340	6.78670	5.91420	HepG2	ETF1
FCHSD1	ENSG00000197948.6	920.79510	608.32200	0.59790	7.06600	5.78060	HepG2	RBM15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 94 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FCHSD1 is not available on ENCORE database.

22 RBPs can affect the splicing of FCHSD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	FCHSD1	ENSG00000197948.6	chr5	-	141025653	141026289			141025653	141025758	141026169	141026289	0.31700	0.00000	0.00010	included	HepG2	RBM22
SE	FCHSD1	ENSG00000197948.6	chr5	-	141021963	141022070			141021268	141021324	141022567	141022655	-0.64600	0.00001	0.00032	excluded	K562	SRSF1
SE	FCHSD1	ENSG00000197948.6	chr5	-	141021963	141022070			141021268	141021324	141022567	141022655	0.45500	0.00001	0.01200	included	K562	ZRANB2
MXE	FCHSD1	ENSG00000197948.6	chr5	-	141027875	141027993	141028031	141028102	141027534	141027663	141028523	141028587	0.14200	0.00001	0.03017	1included	K562	SLBP
MXE	FCHSD1	ENSG00000197948.6	chr5	-	141021963	141022070	141022567	141022655	141021268	141021324	141023784	141024005	-0.26900	0.00001	0.02787	2included	K562	ZRANB2
MXE	FCHSD1	ENSG00000197948.6	chr5	-	141027534	141027663	141027875	141027993	141026964	141027087	141028523	141028587	-0.12200	0.00002	0.00097	2included	K562	DROSHA
SE	FCHSD1	ENSG00000197948.6	chr5	-	141021963	141022070			141021268	141021324	141022567	141022655	-0.30400	0.00004	0.01490	excluded	K562	DROSHA
SE	FCHSD1	ENSG00000197948.6	chr5	-	141027875	141027993			141027534	141027663	141028523	141028587	-0.14900	0.00005	0.00730	excluded	K562	HNRNPUL1
MXE	FCHSD1	ENSG00000197948.6	chr5	-	141021963	141022070	141022567	141022655	141021268	141021324	141023784	141024005	0.18900	0.00009	0.01550	1included	K562	CPSF6
SE	FCHSD1	ENSG00000197948.6	chr5	-	141021963	141022070			141021268	141021324	141022567	141022655	-0.29600	0.00012	0.02383	excluded	K562	ZC3H8

Showing 1 to 10 of 36 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FCHSD1

General Information

Functions

Localization

Domains (AlphaFold: FCHSD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FCHSD1 is not avaliable on ENCORE database.

9 proteins are bound to FCHSD1 RNA:

eCLIP assay for FCHSD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FCHSD1 is not available on ENCORE database.

86 RBPs can affect the gene expression of FCHSD1 :

The Knockdown/knockout RNA-Seq assay for FCHSD1 is not available on ENCORE database.

22 RBPs can affect the splicing of FCHSD1 :

The Knockdown/knockout RNA-Seq assay for FCHSD1 is not avaliable on ENCORE database.