FBXO38

General Information

Gene Name : FBXO38
Gene ID : ENSG00000145868.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FBXO38)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FBXO38	ENSG00000145868.16	25.23	30.37	27.80	ENCSR000AEF
HepG2	FBXO38	ENSG00000145868.16	17.18	22.50	19.84	ENCSR985KAT
K562	FBXO38	ENSG00000145868.16	20.47	21.81	21.14	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FBXO38 is not avaliable on ENCORE database.

Proteins bound to RNA

FBXO38 RNA is bound by 16 proteins.

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eCLIP assay for FBXO38 is not avaliable on ENCORE database.

16 proteins are bound to FBXO38 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	147791768	147791877	+	intron-Distal	4.11445	15.08123	HepG2	U2AF2
chr5	147778559	147778647	+	CDS,intron-Distal,intron-Proximal	4.30062	13.80747	HepG2	BCLAF1
chr5	147791617	147791686	+	intron-Distal	5.13857	12.94604	HepG2	U2AF2
chr5	147793680	147793751	+	CDS,intron-Distal,intron-Proximal	4.40439	12.90217	HepG2	U2AF2
chr5	147822177	147822252	+	3'-UTR	4.68299	10.49523	K562	PUM2
chr5	147810522	147810675	+	intron-Distal	4.18573	10.33445	HepG2	U2AF2
chr5	147791509	147791572	+	intron-Distal	4.87027	7.72109	HepG2	U2AF2
chr5	147774374	147774451	+	CDS	5.34659	7.39496	HepG2	BCLAF1
chr5	147774451	147774469	+	CDS,intron-Proximal	5.02340	7.05570	HepG2	BCLAF1
chr5	147809319	147809441	+	intron-Distal	3.79632	6.98930	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 50 entries

eCLIP assay for FBXO38 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FBXO38 is not available on ENCORE database.
48 RBPs can affect the levels of FBXO38.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FBXO38 is not available on ENCORE database.

48 RBPs can affect the gene expression of FBXO38 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FBXO38	ENSG00000145868.12	1676.12810	1220.09940	0.45800	7.71610	6.44860	HepG2	EIF4G1
FBXO38	ENSG00000145868.12	765.43020	1075.70170	-0.49090	7.33270	6.28650	HepG2	UPF1
FBXO38	ENSG00000145868.12	926.87330	1375.54200	-0.56960	6.81510	5.61960	K562	GRSF1
FBXO38	ENSG00000145868.12	2795.92990	1925.94410	0.53770	6.86330	5.57600	K562	PUF60
FBXO38	ENSG00000145868.12	1311.15190	872.63610	0.58730	5.96280	5.05720	HepG2	U2AF1
FBXO38	ENSG00000145868.12	868.82090	1283.32720	-0.56280	6.73430	5.01380	K562	HNRNPL
FBXO38	ENSG00000145868.12	671.97290	915.07640	-0.44550	5.45740	4.71670	HepG2	TRIM56
FBXO38	ENSG00000145868.12	765.23680	1070.18560	-0.48390	5.00890	3.72240	K562	MATR3
FBXO38	ENSG00000145868.12	717.42640	997.10710	-0.47490	4.78750	3.66620	K562	TIA1
FBXO38	ENSG00000145868.12	759.36940	969.38720	-0.35230	4.30090	3.53030	HepG2	SMN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FBXO38 is not available on ENCORE database.

15 RBPs can affect the splicing of FBXO38 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	FBXO38	ENSG00000145868.12	chr5	+	147806775	147807510	147805084	147805264	147812986	147813087	0.24000	0.00000	0.00000	included	HepG2	U2AF2
SE	FBXO38	ENSG00000145868.12	chr5	+	147790642	147790801	147790197	147790328	147793698	147793869	0.34700	0.00000	0.00016	included	K562	HNRNPL
SE	FBXO38	ENSG00000145868.12	chr5	+	147806775	147807510	147805084	147805264	147812986	147813087	-0.32600	0.00000	0.00000	excluded	HepG2	SF3A3
SE	FBXO38	ENSG00000145868.12	chr5	+	147806775	147807510	147805084	147805264	147812986	147813087	-0.51000	0.00000	0.00000	excluded	HepG2	HNRNPC
A3SS	FBXO38	ENSG00000145868.12	chr5	+	147819183	147819355	147819209	147819355	147817894	147818061	0.20800	0.00000	0.00000	longer	K562	AQR
A3SS	FBXO38	ENSG00000145868.12	chr5	+	147820630	147820808	147820686	147820808	147819986	147820090	0.24200	0.00000	0.00000	longer	K562	AQR
SE	FBXO38	ENSG00000145868.12	chr5	+	147806775	147807510	147805084	147805264	147812986	147813087	0.23400	0.00001	0.00176	included	HepG2	SFPQ
SE	FBXO38	ENSG00000145868.12	chr5	+	147806775	147807510	147805084	147805264	147812986	147813087	-0.31500	0.00002	0.00091	excluded	K562	SRSF1
SE	FBXO38	ENSG00000145868.12	chr5	+	147794803	147794950	147793698	147793869	147795490	147795633	0.20200	0.00003	0.00371	included	K562	HNRNPL
SE	FBXO38	ENSG00000145868.12	chr5	+	147794803	147794950	147793698	147793869	147795490	147795633	0.16700	0.00006	0.00430	included	HepG2	MATR3

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FBXO38

General Information

Functions

Localization

Domains (AlphaFold: FBXO38)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FBXO38 is not avaliable on ENCORE database.

16 proteins are bound to FBXO38 RNA:

eCLIP assay for FBXO38 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FBXO38 is not available on ENCORE database.

48 RBPs can affect the gene expression of FBXO38 :

The Knockdown/knockout RNA-Seq assay for FBXO38 is not available on ENCORE database.

15 RBPs can affect the splicing of FBXO38 :

The Knockdown/knockout RNA-Seq assay for FBXO38 is not avaliable on ENCORE database.