FANCB

General Information

Gene Name : FANCB
Gene ID : ENSG00000181544.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FANCB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FANCB	ENSG00000181544.14	6.71	4.98	5.85	ENCSR000AEF
HepG2	FANCB	ENSG00000181544.14	1.63	3.80	2.71	ENCSR985KAT
K562	FANCB	ENSG00000181544.14	7.66	7.28	7.47	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FANCB is not avaliable on ENCORE database.

Proteins bound to RNA

FANCB RNA is bound by 4 proteins.

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eCLIP assay for FANCB is not avaliable on ENCORE database.

4 proteins are bound to FANCB RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	14883227	14883318	-	CDS,intron-Distal	4.27436	7.43250	K562	QKI
chrX	14861576	14861634	-	3'-UTR,intron-Distal	4.24031	4.57464	K562	PUM2
chrX	14881269	14881335	-	intron-Distal	3.00253	4.56635	K562	KHSRP
chrX	14869970	14870089	-	intron-Distal	3.93023	3.89294	K562	KHSRP
chrX	14882554	14882668	-	intron-Distal,intron-Proximal	3.25066	3.76473	K562	KHSRP
chrX	14865581	14865671	-	intron-Distal	3.13762	3.45178	K562	MATR3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 6 of 6 entries

eCLIP assay for FANCB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FANCB is not available on ENCORE database.
83 RBPs can affect the levels of FANCB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FANCB is not available on ENCORE database.

83 RBPs can affect the gene expression of FANCB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FANCB	ENSG00000181544.9	4.85280	65.01220	-3.74380	13.88450	12.89360	HepG2	ZNF622
FANCB	ENSG00000181544.9	549.68410	1028.82600	-0.90430	12.07240	10.35680	K562	PUF60
FANCB	ENSG00000181544.9	318.40910	581.21650	-0.86820	10.98900	9.78830	K562	DDX47
FANCB	ENSG00000181544.9	27.03070	113.33870	-2.06800	10.30560	9.50500	HepG2	SRFBP1
FANCB	ENSG00000181544.9	134.10500	332.54070	-1.31020	9.80210	8.24750	K562	RPS19
FANCB	ENSG00000181544.9	7.13800	54.37000	-2.92920	8.39410	7.60860	HepG2	TIAL1
FANCB	ENSG00000181544.9	9.05960	63.37500	-2.80640	8.61290	7.51140	HepG2	RPLP0
FANCB	ENSG00000181544.9	237.36810	438.38480	-0.88510	8.17920	6.76940	K562	EIF4A3
FANCB	ENSG00000181544.9	264.33160	520.29010	-0.97700	8.04030	6.75640	K562	TARDBP
FANCB	ENSG00000181544.9	321.49680	559.97160	-0.80050	7.52380	6.26350	K562	GRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 99 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FANCB is not available on ENCORE database.

11 RBPs can affect the splicing of FANCB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165			14882681	14883702	14891107	14891184	-0.36000	0.00000	0.00004	excluded	K562	AQR
SE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165			14882681	14883702	14891107	14891184	-0.63800	0.00000	0.00000	excluded	K562	PUS1
SE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165			14882681	14883702	14891107	14891184	-0.74600	0.00000	0.00000	excluded	K562	U2AF1
SE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165			14882681	14883702	14891107	14891184	-0.58500	0.00000	0.00000	excluded	K562	U2AF2
SE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165			14882681	14883702	14891107	14891184	-0.35000	0.00001	0.00054	excluded	K562	AGGF1
SE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165			14882681	14883702	14891107	14891184	-0.35100	0.00004	0.00270	excluded	K562	UTP18
MXE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165	14887233	14887263	14882681	14883702	14891107	14891184	0.24300	0.00032	0.00649	1included	K562	U2AF2
MXE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165	14887233	14887263	14882681	14883702	14891107	14891184	0.22700	0.00044	0.01046	1included	K562	U2AF1
SE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165			14882681	14883702	14891107	14891184	-0.31000	0.00064	0.09325	excluded	K562	NSUN2
SE	FANCB	ENSG00000181544.9	chrX	-	14887044	14887165			14882681	14883702	14891107	14891184	-0.26100	0.00073	0.02457	excluded	K562	AKAP8L

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FANCB

General Information

Functions

Localization

Domains (AlphaFold: FANCB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FANCB is not avaliable on ENCORE database.

4 proteins are bound to FANCB RNA:

eCLIP assay for FANCB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FANCB is not available on ENCORE database.

83 RBPs can affect the gene expression of FANCB :

The Knockdown/knockout RNA-Seq assay for FANCB is not available on ENCORE database.

11 RBPs can affect the splicing of FANCB :

The Knockdown/knockout RNA-Seq assay for FANCB is not avaliable on ENCORE database.