EDEM2

General Information

Gene Name : EDEM2
Gene ID : ENSG00000088298.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: EDEM2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	EDEM2	ENSG00000088298.12	8.39	10.27	9.33	ENCSR000AEF
HepG2	EDEM2	ENSG00000088298.12	37.32	35.98	36.65	ENCSR985KAT
K562	EDEM2	ENSG00000088298.12	7.42	7.41	7.42	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for EDEM2 is not avaliable on ENCORE database.

Proteins bound to RNA

EDEM2 RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for EDEM2 is not avaliable on ENCORE database.

19 proteins are bound to EDEM2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	33865402	33865510	-	intron-Distal	4.10368	20.03744	K562	PCBP1
chr20	33865202	33865276	-	intron-Distal	5.66875	14.58801	K562	PCBP1
chr20	33866014	33866102	-	intron-Distal,intron-Proximal	3.52646	14.45403	HepG2	EFTUD2
chr20	33865385	33865481	-	intron-Distal	4.53570	12.48637	HepG2	DDX59
chr20	33735003	33735058	-	5'-UTR,CDS,intron-Distal	4.72208	12.43092	HepG2	DDX3X
chr20	33865729	33865791	-	intron-Distal,intron-Proximal	3.53821	11.79280	HepG2	SF3B4
chr20	33735069	33735128	-	5'-UTR,intron-Distal,intron-Proximal	4.85652	10.30616	HepG2	DDX3X
chr20	33734957	33735003	-	5'-UTR,CDS,intron-Distal	4.24178	8.97908	HepG2	DDX3X
chr20	33865743	33865815	-	intron-Distal,intron-Proximal	6.22511	8.50915	HepG2	EFTUD2
chr20	33734881	33734980	-	5'-UTR,CDS,intron-Distal	4.20590	7.85990	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 34 entries

eCLIP assay for EDEM2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for EDEM2 is not available on ENCORE database.
79 RBPs can affect the levels of EDEM2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for EDEM2 is not available on ENCORE database.

79 RBPs can affect the gene expression of EDEM2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
EDEM2	ENSG00000088298.8	146.58060	863.91940	-2.55920	68.12670	64.77630	HepG2	FUBP3
EDEM2	ENSG00000088298.8	3590.76920	1398.35990	1.36050	25.78180	24.34850	HepG2	AKAP1
EDEM2	ENSG00000088298.8	470.41710	206.59300	1.18700	16.02150	14.50450	K562	EIF2S2
EDEM2	ENSG00000088298.8	1131.44700	1737.02700	-0.61850	13.31370	12.15870	HepG2	ETF1
EDEM2	ENSG00000088298.8	436.93270	185.18220	1.23840	12.85720	11.18020	K562	HSPD1
EDEM2	ENSG00000088298.8	516.19410	972.10610	-0.91320	12.35520	11.14900	HepG2	HNRNPA1
EDEM2	ENSG00000088298.8	797.18130	1231.29160	-0.62720	11.67700	10.41740	HepG2	SRSF7
EDEM2	ENSG00000088298.8	689.23990	1074.13260	-0.64010	11.12870	9.98170	HepG2	HNRNPU
EDEM2	ENSG00000088298.8	1400.18040	956.56700	0.54960	10.85560	9.71050	HepG2	SAFB2
EDEM2	ENSG00000088298.8	1712.95320	1193.82780	0.52080	9.67520	8.77420	HepG2	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for EDEM2 is not available on ENCORE database.

15 RBPs can affect the splicing of EDEM2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	EDEM2	ENSG00000088298.8	chr20	-	33732781	33732821			33730175	33730281	33734627	33734738	-0.17300	0.00000	0.00014	excluded	HepG2	U2AF2
MXE	EDEM2	ENSG00000088298.8	chr20	-	33714053	33714178	33722540	33722752	33711692	33711837	33725682	33725808	-0.19500	0.00001	0.00417	2included	HepG2	DDX52
MXE	EDEM2	ENSG00000088298.8	chr20	-	33706400	33706522	33711692	33711837	33703169	33703736	33714053	33714178	0.16500	0.00003	0.00040	1included	HepG2	U2AF2
MXE	EDEM2	ENSG00000088298.8	chr20	-	33714053	33714178	33719430	33719586	33711692	33711837	33721907	33721958	0.10000	0.00006	0.00375	1included	HepG2	PCBP1
MXE	EDEM2	ENSG00000088298.8	chr20	-	33706400	33706522	33711692	33711837	33703169	33703736	33714053	33714178	0.12400	0.00007	0.00229	1included	HepG2	HNRNPUL1
SE	EDEM2	ENSG00000088298.8	chr20	-	33705500	33705656			33703169	33703736	33706400	33706522	0.24500	0.00011	0.03046	included	K562	HNRNPA1
SE	EDEM2	ENSG00000088298.8	chr20	-	33721907	33721958			33719444	33719586	33722540	33722752	0.51600	0.00012	0.04226	included	K562	PPIL4
SE	EDEM2	ENSG00000088298.8	chr20	-	33721907	33721958			33719430	33719586	33722540	33722752	-0.12600	0.00012	0.02274	excluded	HepG2	RBFOX2
SE	EDEM2	ENSG00000088298.8	chr20	-	33721907	33721958			33719444	33719586	33722540	33722752	0.23700	0.00013	0.03892	included	HepG2	FUBP3
MXE	EDEM2	ENSG00000088298.8	chr20	-	33721907	33721958	33722540	33722752	33719444	33719586	33725682	33725808	-0.06900	0.00013	0.00634	2included	HepG2	PCBP1

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

EDEM2

General Information

Functions

Localization

Domains (AlphaFold: EDEM2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for EDEM2 is not avaliable on ENCORE database.

19 proteins are bound to EDEM2 RNA:

eCLIP assay for EDEM2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for EDEM2 is not available on ENCORE database.

79 RBPs can affect the gene expression of EDEM2 :

The Knockdown/knockout RNA-Seq assay for EDEM2 is not available on ENCORE database.

15 RBPs can affect the splicing of EDEM2 :

The Knockdown/knockout RNA-Seq assay for EDEM2 is not avaliable on ENCORE database.